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Regulation of the yeast metabolic cycle by transcription factors with periodic activities.

Rao AR, Pellegrini M.

BMC Syst Biol. 2011 Oct 12;5:160. doi: 10.1186/1752-0509-5-160.


Unraveling condition-dependent networks of transcription factors that control metabolic pathway activity in yeast.

Fendt SM, Oliveira AP, Christen S, Picotti P, Dechant RC, Sauer U.

Mol Syst Biol. 2010 Nov 30;6:432. doi: 10.1038/msb.2010.91.


Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae.

Cokus S, Rose S, Haynor D, Grønbech-Jensen N, Pellegrini M.

BMC Bioinformatics. 2006 Aug 16;7:381.


Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.

Tu BP, Kudlicki A, Rowicka M, McKnight SL.

Science. 2005 Nov 18;310(5751):1152-8. Epub 2005 Oct 27. Erratum in: Science. 2006 Feb 17;311(5763):954.


Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p.

Moxley JF, Jewett MC, Antoniewicz MR, Villas-Boas SG, Alper H, Wheeler RT, Tong L, Hinnebusch AG, Ideker T, Nielsen J, Stephanopoulos G.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6477-82. doi: 10.1073/pnas.0811091106. Epub 2009 Apr 3.


Genome-wide location analysis reveals an important overlap between the targets of the yeast transcriptional regulators Rds2 and Adr1.

Soontorngun N, Baramee S, Tangsombatvichit C, Thepnok P, Cheevadhanarak S, Robert F, Turcotte B.

Biochem Biophys Res Commun. 2012 Jul 13;423(4):632-7. doi: 10.1016/j.bbrc.2012.05.151. Epub 2012 Jun 8.


Hap4 is not essential for activation of respiration at low specific growth rates in Saccharomyces cerevisiae.

Raghevendran V, Patil KR, Olsson L, Nielsen J.

J Biol Chem. 2006 May 5;281(18):12308-14. Epub 2006 Mar 7.


Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.


Restriction of DNA replication to the reductive phase of the metabolic cycle protects genome integrity.

Chen Z, Odstrcil EA, Tu BP, McKnight SL.

Science. 2007 Jun 29;316(5833):1916-9.


Genome-wide oscillation of transcription in yeast.

Reinke H, Gatfield D.

Trends Biochem Sci. 2006 Apr;31(4):189-91. Epub 2006 Feb 24. Review.


Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes.

Bordel S, Agren R, Nielsen J.

PLoS Comput Biol. 2010 Jul 15;6(7):e1000859. doi: 10.1371/journal.pcbi.1000859.


Scheffersomyces stipitis: a comparative systems biology study with the Crabtree positive yeast Saccharomyces cerevisiae.

Papini M, Nookaew I, Uhlén M, Nielsen J.

Microb Cell Fact. 2012 Oct 9;11:136. doi: 10.1186/1475-2859-11-136.


tRNA traffic meets a cell-cycle checkpoint.

Weinert T, Hopper AK.

Cell. 2007 Nov 30;131(5):838-40.


Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.

Chen HC, Lee HC, Lin TY, Li WH, Chen BS.

Bioinformatics. 2004 Aug 12;20(12):1914-27. Epub 2004 Mar 25.


Commitment to a cellular transition precedes genome-wide transcriptional change.

Eser U, Falleur-Fettig M, Johnson A, Skotheim JM.

Mol Cell. 2011 Aug 19;43(4):515-27. doi: 10.1016/j.molcel.2011.06.024.


Transcription: adjusting to adversity by regulating RNA polymerase.

Geiduschek EP, Kassavetis GA.

Curr Biol. 2006 Oct 10;16(19):R849-51.


The Yap family and its role in stress response.

Rodrigues-Pousada C, Menezes RA, Pimentel C.

Yeast. 2010 May;27(5):245-58. doi: 10.1002/yea.1752. Review.

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