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Items: 1 to 20 of 109

1.

Absolute quantification of the glycolytic pathway in yeast: deployment of a complete QconCAT approach.

Carroll KM, Simpson DM, Eyers CE, Knight CG, Brownridge P, Dunn WB, Winder CL, Lanthaler K, Pir P, Malys N, Kell DB, Oliver SG, Gaskell SJ, Beynon RJ.

Mol Cell Proteomics. 2011 Dec;10(12):M111.007633. doi: 10.1074/mcp.M111.007633. Epub 2011 Sep 19.

2.

Global absolute quantification of a proteome: Challenges in the deployment of a QconCAT strategy.

Brownridge P, Holman SW, Gaskell SJ, Grant CM, Harman VM, Hubbard SJ, Lanthaler K, Lawless C, O'Cualain R, Sims P, Watkins R, Beynon RJ.

Proteomics. 2011 Aug;11(15):2957-70. doi: 10.1002/pmic.201100039. Epub 2011 Jun 28. Review.

PMID:
21710569
3.

Peptides quantification by liquid chromatography with matrix-assisted laser desorption/ionization and selected reaction monitoring detection.

Lesur A, Varesio E, Domon B, Hopfgartner G.

J Proteome Res. 2012 Oct 5;11(10):4972-82. doi: 10.1021/pr300514u. Epub 2012 Aug 31.

PMID:
22897511
4.

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis.

Gillet LC, Navarro P, Tate S, Röst H, Selevsek N, Reiter L, Bonner R, Aebersold R.

Mol Cell Proteomics. 2012 Jun;11(6):O111.016717. doi: 10.1074/mcp.O111.016717. Epub 2012 Jan 18.

5.

Development of a method for absolute quantification of equine acute phase proteins using concatenated peptide standards and selected reaction monitoring.

Bundgaard L, Jacobsen S, Dyrlund TF, Sørensen MA, Harman VM, Beynon RJ, Brownridge PJ, Petersen LJ, Bendixen E.

J Proteome Res. 2014 Dec 5;13(12):5635-47. doi: 10.1021/pr500607s. Epub 2014 Oct 7.

PMID:
25250876
6.

Application of an LC-MS/MS method for the simultaneous quantification of human intestinal transporter proteins absolute abundance using a QconCAT technique.

Harwood MD, Achour B, Russell MR, Carlson GL, Warhurst G, Rostami-Hodjegan A.

J Pharm Biomed Anal. 2015 Jun 10;110:27-33. doi: 10.1016/j.jpba.2015.02.043. Epub 2015 Feb 28.

7.

CONSeQuence: prediction of reference peptides for absolute quantitative proteomics using consensus machine learning approaches.

Eyers CE, Lawless C, Wedge DC, Lau KW, Gaskell SJ, Hubbard SJ.

Mol Cell Proteomics. 2011 Nov;10(11):M110.003384. doi: 10.1074/mcp.M110.003384. Epub 2011 Aug 3.

8.

Novel highly sensitive, specific, and straightforward strategy for comprehensive N-terminal proteomics reveals unknown substrates of the mitochondrial peptidase Icp55.

Venne AS, Vögtle FN, Meisinger C, Sickmann A, Zahedi RP.

J Proteome Res. 2013 Sep 6;12(9):3823-30. doi: 10.1021/pr400435d. Epub 2013 Aug 21.

PMID:
23964590
9.

Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics.

Mirzaei H, McBee JK, Watts J, Aebersold R.

Mol Cell Proteomics. 2008 Apr;7(4):813-23. Epub 2007 Dec 17.

10.

High-sensitivity LC-MS/MS quantification of peptides and proteins in complex biological samples: the impact of enzymatic digestion and internal standard selection on method performance.

Bronsema KJ, Bischoff R, van de Merbel NC.

Anal Chem. 2013 Oct 15;85(20):9528-35. doi: 10.1021/ac4015116. Epub 2013 Sep 25.

PMID:
24010948
11.

Absolute multiplexed protein quantification using QconCAT technology.

Brownridge PJ, Harman VM, Simpson DM, Beynon RJ.

Methods Mol Biol. 2012;893:267-93. doi: 10.1007/978-1-61779-885-6_18.

PMID:
22665307
12.

Quantification of amyloid precursor protein isoforms using quantification concatamer internal standard.

Chen J, Wang M, Turko IV.

Anal Chem. 2013 Jan 2;85(1):303-7. doi: 10.1021/ac3033239. Epub 2012 Dec 13.

13.

Bioinformatics analysis of a Saccharomyces cerevisiae N-terminal proteome provides evidence of alternative translation initiation and post-translational N-terminal acetylation.

Helsens K, Van Damme P, Degroeve S, Martens L, Arnesen T, Vandekerckhove J, Gevaert K.

J Proteome Res. 2011 Aug 5;10(8):3578-89. doi: 10.1021/pr2002325. Epub 2011 Jun 20.

PMID:
21619078
14.

Internal standards in the quantitative determination of protein biopharmaceuticals using liquid chromatography coupled to mass spectrometry.

Bronsema KJ, Bischoff R, van de Merbel NC.

J Chromatogr B Analyt Technol Biomed Life Sci. 2012 Apr 15;893-894:1-14. doi: 10.1016/j.jchromb.2012.02.021. Epub 2012 Feb 21. Review.

PMID:
22426285
15.

Absolute quantification strategies in proteomics based on mass spectrometry.

Brönstrup M.

Expert Rev Proteomics. 2004 Dec;1(4):503-12. Review.

PMID:
15966845
16.

Deglycosylation systematically improves N-glycoprotein identification in liquid chromatography-tandem mass spectrometry proteomics for analysis of cell wall stress responses in Saccharomyces cerevisiae lacking Alg3p.

Bailey UM, Schulz BL.

J Chromatogr B Analyt Technol Biomed Life Sci. 2013 Apr 1;923-924:16-21. doi: 10.1016/j.jchromb.2013.01.026. Epub 2013 Feb 4.

PMID:
23454304
17.

Relative quantification of serum proteins from pancreatic ductal adenocarcinoma patients by stable isotope dilution liquid chromatography-mass spectrometry.

Wehr AY, Hwang WT, Blair IA, Yu KH.

J Proteome Res. 2012 Mar 2;11(3):1749-58. doi: 10.1021/pr201011f. Epub 2012 Feb 15.

18.

Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT.

Rivers J, Simpson DM, Robertson DH, Gaskell SJ, Beynon RJ.

Mol Cell Proteomics. 2007 Aug;6(8):1416-27. Epub 2007 May 17.

19.

Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes.

Pratt JM, Simpson DM, Doherty MK, Rivers J, Gaskell SJ, Beynon RJ.

Nat Protoc. 2006;1(2):1029-43.

PMID:
17406340
20.

Absolute quantification of Corynebacterium glutamicum glycolytic and anaplerotic enzymes by QconCAT.

Voges R, Corsten S, Wiechert W, Noack S.

J Proteomics. 2015 Jan 15;113:366-77. doi: 10.1016/j.jprot.2014.10.008. Epub 2014 Oct 25.

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