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Items: 1 to 20 of 95

1.

The consensus sequence for self-catalyzed site-specific G residue depurination in DNA.

Amosova O, Smith A, Fresco JR.

J Biol Chem. 2011 Oct 21;286(42):36316-21. doi: 10.1074/jbc.M111.272047. Epub 2011 Aug 25.

2.

Self-catalyzed site-specific depurination of guanine residues within gene sequences.

Amosova O, Coulter R, Fresco JR.

Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4392-7. Epub 2006 Mar 10.

3.

Self-catalyzed site-specific depurination of G residues mediated by cruciform extrusion in closed circular DNA plasmids.

Amosova O, Kumar V, Deutsch A, Fresco JR.

J Biol Chem. 2011 Oct 21;286(42):36322-30. doi: 10.1074/jbc.M111.272112. Epub 2011 Aug 25.

4.

Why the DNA self-depurination mechanism operates in HB-β but not in β-globin paralogs HB-δ, HB-ɛ1, HB-γ1 and HB-γ2.

Amosova O, Alvarez-Dominguez JR, Fresco JR.

Mutat Res. 2015 Aug;778:11-7. doi: 10.1016/j.mrfmmm.2015.05.001. Epub 2015 May 19.

PMID:
26042536
5.

Ricin A-chain substrate specificity in RNA, DNA, and hybrid stem-loop structures.

Amukele TK, Schramm VL.

Biochemistry. 2004 May 4;43(17):4913-22.

PMID:
15109249
7.

Self-catalytic DNA depurination underlies human β-globin gene mutations at codon 6 that cause anemias and thalassemias.

Alvarez-Dominguez JR, Amosova O, Fresco JR.

J Biol Chem. 2013 Apr 19;288(16):11581-9. doi: 10.1074/jbc.M113.454744. Epub 2013 Mar 1.

8.

Ricin A-chain: kinetics, mechanism, and RNA stem-loop inhibitors.

Chen XY, Link TM, Schramm VL.

Biochemistry. 1998 Aug 18;37(33):11605-13.

PMID:
9708998
9.

Solution structure of an oncogenic DNA duplex containing a G.A mismatch.

Carbonnaux C, van der Marel GA, van Boom JH, Guschlbauer W, Fazakerley GV.

Biochemistry. 1991 Jun 4;30(22):5449-58.

PMID:
2036413
10.

Slow conformational exchange in DNA minihairpin loops: a conformational study of the circular dumbbell d<pCGC-TT-GCG-TT>.

Ippel JH, Lanzotti V, Galeone A, Mayol L, Van den Boogaart JE, Pikkemaat JA, Altona C.

Biopolymers. 1995 Dec;36(6):681-94.

PMID:
8555416
11.

Structure of a T4 hairpin loop on a Z-DNA stem and comparison with A-RNA and B-DNA loops.

Chattopadhyaya R, Grzeskowiak K, Dickerson RE.

J Mol Biol. 1990 Jan 5;211(1):189-210.

PMID:
2299669
12.

[A code governing specific binding of regulatory proteins to DNA and structure of stereospecific sites of regulatory proteins].

Gurskiĭ GV, Tumanian VG, Zasedatelev AS, Zhuze AL, Grokhovskiĭ SL, Gottikh BP.

Mol Biol (Mosk). 1975 Sep-Oct;9(5):635-51. Russian.

PMID:
1214804
13.

The transition from a neutral-pH double helix to a low-pH triple helix induces a conformational switch in the CCCG tetraloop closing a Watson-Crick stem.

van Dongen MJ, Wijmenga SS, van der Marel GA, van Boom JH, Hilbers CW.

J Mol Biol. 1996 Nov 15;263(5):715-29.

PMID:
8947571
14.
15.
16.

Dissection of the role of the conserved G.U pair in group I RNA self-splicing.

Knitt DS, Narlikar GJ, Herschlag D.

Biochemistry. 1994 Nov 22;33(46):13864-79.

PMID:
7947795
17.
18.

Dynamics and stability of GCAA tetraloops with 2-aminopurine and purine substitutions.

Sarzynska J, Kulinski T.

J Biomol Struct Dyn. 2005 Feb;22(4):425-39.

PMID:
15588106
19.
20.

Comparative structural analysis by [1H,31P]-NMR and restrained molecular dynamics of two DNA hairpins from a strong DNA topoisomerase II cleavage site.

Mauffret O, Amir-Aslani A, Maroun RG, Monnot M, Lescot E, Fermandjian S.

J Mol Biol. 1998 Oct 30;283(3):643-55.

PMID:
9784373
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