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Results: 1 to 20 of 99

Similar articles for PubMed (Select 21477297)

1.

An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations.

Tan JC, Miller BA, Tan A, Patel JJ, Cheeseman IH, Anderson TJ, Manske M, Maslen G, Kwiatkowski DP, Ferdig MT.

Genome Biol. 2011;12(4):R35. doi: 10.1186/gb-2011-12-4-r35. Epub 2011 Apr 8.

2.

Combined array CGH plus SNP genome analyses in a single assay for optimized clinical testing.

Wiszniewska J, Bi W, Shaw C, Stankiewicz P, Kang SH, Pursley AN, Lalani S, Hixson P, Gambin T, Tsai CH, Bock HG, Descartes M, Probst FJ, Scaglia F, Beaudet AL, Lupski JR, Eng C, Cheung SW, Bacino C, Patel A.

Eur J Hum Genet. 2014 Jan;22(1):79-87. doi: 10.1038/ejhg.2013.77. Epub 2013 May 22.

3.

Detection of genome-wide polymorphisms in the AT-rich Plasmodium falciparum genome using a high-density microarray.

Jiang H, Yi M, Mu J, Zhang L, Ivens A, Klimczak LJ, Huyen Y, Stephens RM, Su XZ.

BMC Genomics. 2008 Aug 25;9:398. doi: 10.1186/1471-2164-9-398.

4.

A microarray platform and novel SNP calling algorithm to evaluate Plasmodium falciparum field samples of low DNA quantity.

Jacob CG, Tan JC, Miller BA, Tan A, Takala-Harrison S, Ferdig MT, Plowe CV.

BMC Genomics. 2014 Aug 26;15:719. doi: 10.1186/1471-2164-15-719.

6.

Evaluation of copy number variation detection for a SNP array platform.

Zhang X, Du R, Li S, Zhang F, Jin L, Wang H.

BMC Bioinformatics. 2014 Feb 21;15:50. doi: 10.1186/1471-2105-15-50.

7.

Analyzing copy number variation using SNP array data: protocols for calling CNV and association tests.

Lin CF, Naj AC, Wang LS.

Curr Protoc Hum Genet. 2013 Oct 18;79:Unit 1.27.. doi: 10.1002/0471142905.hg0127s79.

8.

Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes.

Gresham D, Curry B, Ward A, Gordon DB, Brizuela L, Kruglyak L, Botstein D.

Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1482-7. doi: 10.1073/pnas.0913883107. Epub 2010 Jan 8.

9.

Optimizing comparative genomic hybridization probes for genotyping and SNP detection in Plasmodium falciparum.

Tan JC, Patel JJ, Tan A, Blain JC, Albert TJ, Lobo NF, Ferdig MT.

Genomics. 2009 Jun;93(6):543-50. doi: 10.1016/j.ygeno.2009.02.007. Epub 2009 Mar 11.

10.

Genome-wide mapping of copy number variation in humans: comparative analysis of high resolution array platforms.

Haraksingh RR, Abyzov A, Gerstein M, Urban AE, Snyder M.

PLoS One. 2011;6(11):e27859. doi: 10.1371/journal.pone.0027859. Epub 2011 Nov 30.

11.

Exploiting sequence similarity to validate the sensitivity of SNP arrays in detecting fine-scaled copy number variations.

Wong G, Leckie C, Gorringe KL, Haviv I, Campbell IG, Kowalczyk A.

Bioinformatics. 2010 Apr 15;26(8):1007-14. doi: 10.1093/bioinformatics/btq088. Epub 2010 Feb 25.

12.

Analysis of copy loss and gain variations in Holstein cattle autosomes using BeadChip SNPs.

Seroussi E, Glick G, Shirak A, Yakobson E, Weller JI, Ezra E, Zeron Y.

BMC Genomics. 2010 Nov 29;11:673. doi: 10.1186/1471-2164-11-673.

13.

Optimizing copy number variation analysis using genome-wide short sequence oligonucleotide arrays.

Oldridge DA, Banerjee S, Setlur SR, Sboner A, Demichelis F.

Nucleic Acids Res. 2010 Jun;38(10):3275-86. doi: 10.1093/nar/gkq073. Epub 2010 Feb 15.

14.

Detection of copy number variation using SNP genotyping.

Cooper GM, Mefford HC.

Methods Mol Biol. 2011;767:243-52. doi: 10.1007/978-1-61779-201-4_18.

PMID:
21822880
15.

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping.

Zhan B, Fadista J, Thomsen B, Hedegaard J, Panitz F, Bendixen C.

BMC Genomics. 2011 Nov 14;12:557. doi: 10.1186/1471-2164-12-557.

16.

Comparing CNV detection methods for SNP arrays.

Winchester L, Yau C, Ragoussis J.

Brief Funct Genomic Proteomic. 2009 Sep;8(5):353-66. doi: 10.1093/bfgp/elp017. Epub 2009 Sep 8. Review.

17.

DNA microarray-based mutation discovery and genotyping.

Gresham D.

Methods Mol Biol. 2011;772:179-91. doi: 10.1007/978-1-61779-228-1_10.

PMID:
22065438
18.

The landscape of inherited and de novo copy number variants in a Plasmodium falciparum genetic cross.

Samarakoon U, Gonzales JM, Patel JJ, Tan A, Checkley L, Ferdig MT.

BMC Genomics. 2011 Sep 22;12:457. doi: 10.1186/1471-2164-12-457.

19.

Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes.

Shen F, Huang J, Fitch KR, Truong VB, Kirby A, Chen W, Zhang J, Liu G, McCarroll SA, Jones KW, Shapero MH.

BMC Genet. 2008 Mar 28;9:27. doi: 10.1186/1471-2156-9-27.

20.

Identification of copy number variations in Qinchuan cattle using BovineHD Genotyping Beadchip array.

Zhang Q, Ma Y, Wang X, Zhang Y, Zhao X.

Mol Genet Genomics. 2015 Feb;290(1):319-27. doi: 10.1007/s00438-014-0923-4. Epub 2014 Sep 24.

PMID:
25248638
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