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Items: 1 to 20 of 96

1.

The human studies database project: federating human studies design data using the ontology of clinical research.

Sim I, Carini S, Tu S, Wynden R, Pollock BH, Mollah SA, Gabriel D, Hagler HK, Scheuermann RH, Lehmann HP, Wittkowski KM, Nahm M, Bakken S.

AMIA Jt Summits Transl Sci Proc. 2010 Mar 1;2010:51-5.

2.

Ontology-based federated data access to human studies information.

Sim I, Carini S, Tu SW, Detwiler LT, Brinkley J, Mollah SA, Burke K, Lehmann HP, Chakraborty S, Wittkowski KM, Pollock BH, Johnson TM, Huser V; Human Studies Database Project.

AMIA Annu Symp Proc. 2012;2012:856-65. Epub 2012 Nov 3.

3.

Federated ontology-based queries over cancer data.

González-Beltrán A, Tagger B, Finkelstein A.

BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S9. doi: 10.1186/1471-2105-13-S1-S9.

4.

The Ontology of Clinical Research (OCRe): an informatics foundation for the science of clinical research.

Sim I, Tu SW, Carini S, Lehmann HP, Pollock BH, Peleg M, Wittkowski KM.

J Biomed Inform. 2014 Dec;52:78-91. doi: 10.1016/j.jbi.2013.11.002. Epub 2013 Nov 13.

5.

caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid.

Saltz J, Oster S, Hastings S, Langella S, Kurc T, Sanchez W, Kher M, Manisundaram A, Shanbhag K, Covitz P.

Bioinformatics. 2006 Aug 1;22(15):1910-6. Epub 2006 Jun 9.

6.

The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research.

Tenenbaum JD, Whetzel PL, Anderson K, Borromeo CD, Dinov ID, Gabriel D, Kirschner B, Mirel B, Morris T, Noy N, Nyulas C, Rubenson D, Saxman PR, Singh H, Whelan N, Wright Z, Athey BD, Becich MJ, Ginsburg GS, Musen MA, Smith KA, Tarantal AF, Rubin DL, Lyster P.

J Biomed Inform. 2011 Feb;44(1):137-45. doi: 10.1016/j.jbi.2010.10.003. Epub 2010 Oct 16.

7.

A semantic proteomics dashboard (SemPoD) for data management in translational research.

Jayapandian CP, Zhao M, Ewing RM, Zhang GQ, Sahoo SS.

BMC Syst Biol. 2012;6 Suppl 3:S20. doi: 10.1186/1752-0509-6-S3-S20. Epub 2012 Dec 17.

8.

A system to build distributed multivariate models and manage disparate data sharing policies: implementation in the scalable national network for effectiveness research.

Meeker D, Jiang X, Matheny ME, Farcas C, D'Arcy M, Pearlman L, Nookala L, Day ME, Kim KK, Kim H, Boxwala A, El-Kareh R, Kuo GM, Resnic FS, Kesselman C, Ohno-Machado L.

J Am Med Inform Assoc. 2015 Nov;22(6):1187-95. doi: 10.1093/jamia/ocv017. Epub 2015 Jul 3.

9.

caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Oster S, Langella S, Hastings S, Ervin D, Madduri R, Phillips J, Kurc T, Siebenlist F, Covitz P, Shanbhag K, Foster I, Saltz J.

J Am Med Inform Assoc. 2008 Mar-Apr;15(2):138-49. Epub 2007 Dec 20.

10.

linkedISA: semantic representation of ISA-Tab experimental metadata.

González-Beltrán A, Maguire E, Sansone SA, Rocca-Serra P.

BMC Bioinformatics. 2014;15 Suppl 14:S4. doi: 10.1186/1471-2105-15-S14-S4. Epub 2014 Nov 27.

11.

Implementation of a deidentified federated data network for population-based cohort discovery.

Anderson N, Abend A, Mandel A, Geraghty E, Gabriel D, Wynden R, Kamerick M, Anderson K, Rainwater J, Tarczy-Hornoch P.

J Am Med Inform Assoc. 2012 Jun;19(e1):e60-7. Epub 2011 Aug 26.

12.

Common metrics to assess the efficiency of clinical research.

Rubio DM.

Eval Health Prof. 2013 Dec;36(4):432-46. doi: 10.1177/0163278713499586. Epub 2013 Aug 19.

13.

Research Networking Systems: The State of Adoption at Institutions Aiming to Augment Translational Research Infrastructure.

Obeid JS, Johnson LM, Stallings S, Eichmann D.

J Transl Med Epidemiol. 2014;2(2):1026. Epub 2014 Aug 2.

14.

Alignment of emergency medicine research efforts with Clinical and Translational Science Awards.

Miller CD, Kumar R, Storrow AB.

Acad Emerg Med. 2008 Jul;15(7):672-7. Erratum in: Acad Emerg Med. 2008 Aug;15(8):743.

PMID:
19086215
15.

Federated Aggregate Cohort Estimator (FACE): an easy to deploy, vendor neutral, multi-institutional cohort query architecture.

Wyatt MC, Hendrickson RC, Ames M, Bondy J, Ranauro P, English TM, Bobitt K, Davidson A, Houston TK, Embi PJ, Berner ES.

J Biomed Inform. 2014 Dec;52:65-71. doi: 10.1016/j.jbi.2013.11.009. Epub 2013 Dec 4.

16.

A data model and database for high-resolution pathology analytical image informatics.

Wang F, Kong J, Cooper L, Pan T, Kurc T, Chen W, Sharma A, Niedermayr C, Oh TW, Brat D, Farris AB, Foran DJ, Saltz J.

J Pathol Inform. 2011;2:32. doi: 10.4103/2153-3539.83192. Epub 2011 Jul 26.

17.

Epilepsy informatics and an ontology-driven infrastructure for large database research and patient care in epilepsy.

Sahoo SS, Zhang GQ, Lhatoo SD.

Epilepsia. 2013 Aug;54(8):1335-41. doi: 10.1111/epi.12211. Epub 2013 May 3. Review.

18.

Adoption and Adaptation of caGrid for CTSA.

Hastings S, Oster S, Langella S, Melean C, Borlawsky T, Dhavel R, Payne P.

Summit on Translat Bioinforma. 2009 Mar 1;2009:44-8.

19.

Adoption of Research Networking Systems in the Clinical and Translational Science Award (CTSA) Consortium.

Johnson LM, Stallings S, Eichmann D, Obeid JS.

AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:93. eCollection 2013.

PMID:
24303307
20.

Developing a multidisciplinary model of comparative effectiveness research within a clinical and translational science award.

Marantz PR, Strelnick AH, Currie B, Bhalla R, Blank AE, Meissner P, Selwyn PA, Walker EA, Hsu DT, Shamoon H.

Acad Med. 2011 Jun;86(6):712-7. doi: 10.1097/ACM.0b013e318217ea82.

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