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Epigenetic profile of the euchromatic region of human Y chromosome.

Singh NP, Madabhushi SR, Srivastava S, Senthilkumar R, Neeraja C, Khosla S, Mishra RK.

Nucleic Acids Res. 2011 May;39(9):3594-606. doi: 10.1093/nar/gkq1342. Epub 2011 Jan 19.


The 5' regulatory sequences of active miR-146a promoters are hypomethylated and associated with euchromatic histone modification marks in B lymphoid cells.

Szenthe K, Koroknai A, Banati F, Bathori Z, Lozsa R, Burgyan J, Wolf H, Salamon D, Nagy K, Niller HH, Minarovits J.

Biochem Biophys Res Commun. 2013 Apr 19;433(4):489-95. doi: 10.1016/j.bbrc.2013.03.022. Epub 2013 Mar 23.


NF-Y dependent epigenetic modifications discriminate between proliferating and postmitotic tissue.

Gurtner A, Fuschi P, Magi F, Colussi C, Gaetano C, Dobbelstein M, Sacchi A, Piaggio G.

PLoS One. 2008 Apr 23;3(4):e2047. doi: 10.1371/journal.pone.0002047.


The patterns of histone modifications in the vicinity of transcription factor binding sites in human lymphoblastoid cell lines.

Nie Y, Liu H, Sun X.

PLoS One. 2013;8(3):e60002. doi: 10.1371/journal.pone.0060002. Epub 2013 Mar 19.


Developmental silencing of the AtTERT gene is associated with increased H3K27me3 loading and maintenance of its euchromatic environment.

Ogrocká A, Sýkorová E, Fajkus J, Fojtová M.

J Exp Bot. 2012 Jun;63(11):4233-41. doi: 10.1093/jxb/ers107. Epub 2012 Apr 17.


Aberrant epigenetic modifications in the CTCF binding domain of the IGF2/H19 gene in prostate cancer compared with benign prostate hyperplasia.

Paradowska A, Fenic I, Konrad L, Sturm K, Wagenlehner F, Weidner W, Steger K.

Int J Oncol. 2009 Jul;35(1):87-96.


Epigenetic profiling at mouse imprinted gene clusters reveals novel epigenetic and genetic features at differentially methylated regions.

Dindot SV, Person R, Strivens M, Garcia R, Beaudet AL.

Genome Res. 2009 Aug;19(8):1374-83. doi: 10.1101/gr.089185.108. Epub 2009 Jun 19.


Disruption of CTCF at the miR-125b1 locus in gynecological cancers.

Soto-Reyes E, González-Barrios R, Cisneros-Soberanis F, Herrera-Goepfert R, Pérez V, Cantú D, Prada D, Castro C, Recillas-Targa F, Herrera LA.

BMC Cancer. 2012 Jan 25;12:40. doi: 10.1186/1471-2407-12-40.


Genome-wide analysis reveals distinct patterns of epigenetic features in long non-coding RNA loci.

Sati S, Ghosh S, Jain V, Scaria V, Sengupta S.

Nucleic Acids Res. 2012 Nov 1;40(20):10018-31. doi: 10.1093/nar/gks776. Epub 2012 Aug 25.


Maintenance of X- and Y-inactivation of the pseudoautosomal (PAR2) gene SPRY3 is independent from DNA methylation and associated to multiple layers of epigenetic modifications.

De Bonis ML, Cerase A, Matarazzo MR, Ferraro M, Strazzullo M, Hansen RS, Chiurazzi P, Neri G, D'Esposito M.

Hum Mol Genet. 2006 Apr 1;15(7):1123-32. Epub 2006 Feb 24.


Genome-wide epigenetic analysis of human pluripotent stem cells by ChIP and ChIP-Seq.

Hitchler MJ, Rice JC.

Methods Mol Biol. 2011;767:253-67. doi: 10.1007/978-1-61779-201-4_19.


Epigenetic regulation of the X-chromosomal macrosatellite repeat encoding for the cancer/testis gene CT47.

Balog J, Miller D, Sanchez-Curtailles E, Carbo-Marques J, Block G, Potman M, de Knijff P, Lemmers RJ, Tapscott SJ, van der Maarel SM.

Eur J Hum Genet. 2012 Feb;20(2):185-91. doi: 10.1038/ejhg.2011.150. Epub 2011 Aug 3.


Cathepsin L stabilizes the histone modification landscape on the Y chromosome and pericentromeric heterochromatin.

Bulynko YA, Hsing LC, Mason RW, Tremethick DJ, Grigoryev SA.

Mol Cell Biol. 2006 Jun;26(11):4172-84.


Cell cycle-dependent accumulation of histone H3.3 and euchromatic histone modifications in pericentromeric heterochromatin in response to a decrease in DNA methylation levels.

Sugimura K, Fukushima Y, Ishida M, Ito S, Nakamura M, Mori Y, Okumura K.

Exp Cell Res. 2010 Oct 15;316(17):2731-46. doi: 10.1016/j.yexcr.2010.06.016. Epub 2010 Jun 25.


Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk.

Brinkman AB, Gu H, Bartels SJ, Zhang Y, Matarese F, Simmer F, Marks H, Bock C, Gnirke A, Meissner A, Stunnenberg HG.

Genome Res. 2012 Jun;22(6):1128-38. doi: 10.1101/gr.133728.111. Epub 2012 Mar 30.


Disruption of genomic neighbourhood at the imprinted IGF2-H19 locus in Beckwith-Wiedemann syndrome and Silver-Russell syndrome.

Nativio R, Sparago A, Ito Y, Weksberg R, Riccio A, Murrell A.

Hum Mol Genet. 2011 Apr 1;20(7):1363-74. doi: 10.1093/hmg/ddr018. Epub 2011 Jan 31.


Dynamic epigenetic regulation of the Oct4 and Nanog regulatory regions during neural differentiation in rhesus nuclear transfer embryonic stem cells.

Wang K, Chen Y, Chang EA, Knott JG, Cibelli JB.

Cloning Stem Cells. 2009 Dec;11(4):483-96. doi: 10.1089/clo.2009.0019.


High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression.

Li X, Wang X, He K, Ma Y, Su N, He H, Stolc V, Tongprasit W, Jin W, Jiang J, Terzaghi W, Li S, Deng XW.

Plant Cell. 2008 Feb;20(2):259-76. doi: 10.1105/tpc.107.056879. Epub 2008 Feb 8.


Epigenetic regulation of the human p53 gene promoter by the CTCF transcription factor in transformed cell lines.

Soto-Reyes E, Recillas-Targa F.

Oncogene. 2010 Apr 15;29(15):2217-27. doi: 10.1038/onc.2009.509. Epub 2010 Jan 25.

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