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Constraint-based modeling analysis of the metabolism of two Pelobacter species.

Sun J, Haveman SA, Bui O, Fahland TR, Lovley DR.

BMC Syst Biol. 2010 Dec 23;4:174. doi: 10.1186/1752-0509-4-174.


Evolution from a respiratory ancestor to fill syntrophic and fermentative niches: comparative fenomics of six Geobacteraceae species.

Butler JE, Young ND, Lovley DR.

BMC Genomics. 2009 Mar 11;10:103. doi: 10.1186/1471-2164-10-103.


Genome-scale constraint-based modeling of Geobacter metallireducens.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.

BMC Syst Biol. 2009 Jan 28;3:15. doi: 10.1186/1752-0509-3-15.


Fe(III) and S0 reduction by Pelobacter carbinolicus.

Lovley DR, Phillips EJ, Lonergan DJ, Widman PK.

Appl Environ Microbiol. 1995 Jun;61(6):2132-8.


Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production.

Haveman SA, DiDonato RJ Jr, Villanueva L, Shelobolina ES, Postier BL, Xu B, Liu A, Lovley DR.

Appl Environ Microbiol. 2008 Jul;74(14):4277-84. doi: 10.1128/AEM.02901-07. Epub 2008 May 30.


Interspecies electron transfer via hydrogen and formate rather than direct electrical connections in cocultures of Pelobacter carbinolicus and Geobacter sulfurreducens.

Rotaru AE, Shrestha PM, Liu F, Ueki T, Nevin K, Summers ZM, Lovley DR.

Appl Environ Microbiol. 2012 Nov;78(21):7645-51. doi: 10.1128/AEM.01946-12. Epub 2012 Aug 24.


Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.

Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo MJ, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.

Microbiology. 2008 May;154(Pt 5):1422-35. doi: 10.1099/mic.0.2007/014365-0.


Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.

Mahadevan R, Bond DR, Butler JE, Esteve-Nuñez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR.

Appl Environ Microbiol. 2006 Feb;72(2):1558-68.


The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.

Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR.

BMC Genomics. 2010 Sep 9;11:490. doi: 10.1186/1471-2164-11-490.


c-Type cytochromes in Pelobacter carbinolicus.

Haveman SA, Holmes DE, Ding YH, Ward JE, Didonato RJ Jr, Lovley DR.

Appl Environ Microbiol. 2006 Nov;72(11):6980-5. Epub 2006 Aug 25.


Geobacter sulfurreducens strain engineered for increased rates of respiration.

Izallalen M, Mahadevan R, Burgard A, Postier B, Didonato R Jr, Sun J, Schilling CH, Lovley DR.

Metab Eng. 2008 Sep;10(5):267-75. doi: 10.1016/j.ymben.2008.06.005. Epub 2008 Jun 27.


Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.

Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR.

ISME J. 2011 Feb;5(2):305-16. doi: 10.1038/ismej.2010.117. Epub 2010 Jul 29.


Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.

Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR.

Microb Biotechnol. 2009 Mar;2(2):274-86. doi: 10.1111/j.1751-7915.2009.00087.x.


Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.

Holmes DE, Nevin KP, Lovley DR.

Int J Syst Evol Microbiol. 2004 Sep;54(Pt 5):1591-9.


Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments.

Miller LD, Mosher JJ, Venkateswaran A, Yang ZK, Palumbo AV, Phelps TJ, Podar M, Schadt CW, Keller M.

BMC Microbiol. 2010 May 24;10:149. doi: 10.1186/1471-2180-10-149.


Dissimilatory Fe(III) and Mn(IV) reduction.

Lovley DR, Holmes DE, Nevin KP.

Adv Microb Physiol. 2004;49:219-86. Review.


The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.

Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.

BMC Microbiol. 2009 May 27;9:109. doi: 10.1186/1471-2180-9-109.

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