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Results: 1 to 20 of 96

1.

P2CS: a database of prokaryotic two-component systems.

Barakat M, Ortet P, Whitworth DE.

Nucleic Acids Res. 2011 Jan;39(Database issue):D771-6. doi: 10.1093/nar/gkq1023. Epub 2010 Nov 4.

PMID:
21051349
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

P2CS: a two-component system resource for prokaryotic signal transduction research.

Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Méjean V, Whitworth DE.

BMC Genomics. 2009 Jul 15;10:315. doi: 10.1186/1471-2164-10-315.

PMID:
19604365
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

MiST: a microbial signal transduction database.

Ulrich LE, Zhulin IB.

Nucleic Acids Res. 2007 Jan;35(Database issue):D386-90. Epub 2006 Nov 28.

PMID:
17135192
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.

Ortet P, De Luca G, Whitworth DE, Barakat M.

BMC Genomics. 2012 Nov 15;13:628. doi: 10.1186/1471-2164-13-628.

PMID:
23153078
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.

Lima T, Auchincloss AH, Coudert E, Keller G, Michoud K, Rivoire C, Bulliard V, de Castro E, Lachaize C, Baratin D, Phan I, Bougueleret L, Bairoch A.

Nucleic Acids Res. 2009 Jan;37(Database issue):D471-8. doi: 10.1093/nar/gkn661. Epub 2008 Oct 11.

PMID:
18849571
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.

Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O.

Nucleic Acids Res. 2007 Jan;35(Database issue):D260-4. Epub 2006 Dec 6.

PMID:
17151080
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Phylogenomics of prokaryotic ribosomal proteins.

Yutin N, Puigbò P, Koonin EV, Wolf YI.

PLoS One. 2012;7(5):e36972. doi: 10.1371/journal.pone.0036972. Epub 2012 May 16.

PMID:
22615861
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Sentra: a database of signal transduction proteins for comparative genome analysis.

D'Souza M, Glass EM, Syed MH, Zhang Y, Rodriguez A, Maltsev N, Galperin MY.

Nucleic Acids Res. 2007 Jan;35(Database issue):D271-3. Epub 2006 Nov 29.

PMID:
17135204
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

GeneTrees: a phylogenomics resource for prokaryotes.

Tian Y, Dickerman AW.

Nucleic Acids Res. 2007 Jan;35(Database issue):D328-31. Epub 2006 Dec 6.

PMID:
17151073
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

Koonin EV, Mushegian AR, Galperin MY, Walker DR.

Mol Microbiol. 1997 Aug;25(4):619-37.

PMID:
9379893
[PubMed - indexed for MEDLINE]
11.

P2RP: a Web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes.

Barakat M, Ortet P, Whitworth DE.

BMC Genomics. 2013 Apr 20;14:269. doi: 10.1186/1471-2164-14-269.

PMID:
23601859
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Evolution of prokaryotic subtilases: genome-wide analysis reveals novel subfamilies with different catalytic residues.

Siezen RJ, Renckens B, Boekhorst J.

Proteins. 2007 May 15;67(3):681-94.

PMID:
17348030
[PubMed - indexed for MEDLINE]
13.

Two-component systems of the myxobacteria: structure, diversity and evolutionary relationships.

Whitworth DE, Cock PJ.

Microbiology. 2008 Feb;154(Pt 2):360-72. doi: 10.1099/mic.0.2007/013672-0.

PMID:
18227240
[PubMed - indexed for MEDLINE]
Free Article
14.

ProLysED: an integrated database and meta-server of bacterial protease systems.

Firdaus Raih M, Ahmad HA, Sharum MY, Azizi N, Mohamed R.

Appl Bioinformatics. 2005;4(2):147-50.

PMID:
16128617
[PubMed - indexed for MEDLINE]
15.

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.

Biol Direct. 2007 Nov 27;2:33.

PMID:
18042280
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The genetic organisation of prokaryotic two-component system signalling pathways.

Williams RH, Whitworth DE.

BMC Genomics. 2010 Dec 20;11:720. doi: 10.1186/1471-2164-11-720.

PMID:
21172000
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Sensing of environmental signals: classification of chemoreceptors according to the size of their ligand binding regions.

Lacal J, García-Fontana C, Muñoz-Martínez F, Ramos JL, Krell T.

Environ Microbiol. 2010 Nov;12(11):2873-84. doi: 10.1111/j.1462-2920.2010.02325.x. Epub 2010 Aug 25. Review.

PMID:
20738376
[PubMed - indexed for MEDLINE]
18.

MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.

PMID:
17044936
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A genome-wide study of two-component signal transduction systems in eight newly sequenced mutans streptococci strains.

Song L, Sudhakar P, Wang W, Conrads G, Brock A, Sun J, Wagner-Döbler I, Zeng AP.

BMC Genomics. 2012 Apr 4;13:128. doi: 10.1186/1471-2164-13-128.

PMID:
22475007
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.

Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV.

Genome Res. 2001 Mar;11(3):356-72.

PMID:
11230160
[PubMed - indexed for MEDLINE]
Free Article

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