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Results: 1 to 20 of 210

1.

Misty Mountain clustering: application to fast unsupervised flow cytometry gating.

Sugár IP, Sealfon SC.

BMC Bioinformatics. 2010 Oct 9;11:502. doi: 10.1186/1471-2105-11-502.

PMID:
20932336
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding.

Ge Y, Sealfon SC.

Bioinformatics. 2012 Aug 1;28(15):2052-8. doi: 10.1093/bioinformatics/bts300. Epub 2012 May 17.

PMID:
22595209
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Data reduction for spectral clustering to analyze high throughput flow cytometry data.

Zare H, Shooshtari P, Gupta A, Brinkman RR.

BMC Bioinformatics. 2010 Jul 28;11:403. doi: 10.1186/1471-2105-11-403.

PMID:
20667133
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Automated gating of flow cytometry data via robust model-based clustering.

Lo K, Brinkman RR, Gottardo R.

Cytometry A. 2008 Apr;73(4):321-32. doi: 10.1002/cyto.a.20531.

PMID:
18307272
[PubMed - indexed for MEDLINE]
Free Article
5.

caBIG VISDA: modeling, visualization, and discovery for cluster analysis of genomic data.

Zhu Y, Li H, Miller DJ, Wang Z, Xuan J, Clarke R, Hoffman EP, Wang Y.

BMC Bioinformatics. 2008 Sep 18;9:383. doi: 10.1186/1471-2105-9-383.

PMID:
18801195
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A modified hyperplane clustering algorithm allows for efficient and accurate clustering of extremely large datasets.

Sharma A, Podolsky R, Zhao J, McIndoe RA.

Bioinformatics. 2009 May 1;25(9):1152-7. doi: 10.1093/bioinformatics/btp123. Epub 2009 Mar 4.

PMID:
19261720
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data.

Fu L, Medico E.

BMC Bioinformatics. 2007 Jan 4;8:3.

PMID:
17204155
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Feature-guided clustering of multi-dimensional flow cytometry datasets.

Zeng QT, Pratt JP, Pak J, Ravnic D, Huss H, Mentzer SJ.

J Biomed Inform. 2007 Jun;40(3):325-31. Epub 2006 Jun 27.

PMID:
16901761
[PubMed - indexed for MEDLINE]
Free Article
9.

Resolving the structure of interactomes with hierarchical agglomerative clustering.

Park Y, Bader JS.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S44. doi: 10.1186/1471-2105-12-S1-S44.

PMID:
21342576
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer.

Giancarlo R, Scaturro D, Utro F.

BMC Bioinformatics. 2008 Oct 29;9:462. doi: 10.1186/1471-2105-9-462.

PMID:
18959783
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Information criterion-based clustering with order-restricted candidate profiles in short time-course microarray experiments.

Liu T, Lin N, Shi N, Zhang B.

BMC Bioinformatics. 2009 May 15;10:146. doi: 10.1186/1471-2105-10-146.

PMID:
19445669
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

NIFTI: an evolutionary approach for finding number of clusters in microarray data.

Jonnalagadda S, Srinivasan R.

BMC Bioinformatics. 2009 Jan 30;10:40. doi: 10.1186/1471-2105-10-40.

PMID:
19178750
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

flowClust: a Bioconductor package for automated gating of flow cytometry data.

Lo K, Hahne F, Brinkman RR, Gottardo R.

BMC Bioinformatics. 2009 May 14;10:145. doi: 10.1186/1471-2105-10-145.

PMID:
19442304
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CLAG: an unsupervised non hierarchical clustering algorithm handling biological data.

Dib L, Carbone A.

BMC Bioinformatics. 2012 Aug 8;13:194. doi: 10.1186/1471-2105-13-194.

PMID:
23216858
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Automated hierarchical density shaving: a robust automated clustering and visualization framework for large biological data sets.

Gupta G, Liu A, Ghosh J.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Apr-Jun;7(2):223-37. doi: 10.1109/TCBB.2008.32.

PMID:
20431143
[PubMed - indexed for MEDLINE]
16.

Optimizing transformations for automated, high throughput analysis of flow cytometry data.

Finak G, Perez JM, Weng A, Gottardo R.

BMC Bioinformatics. 2010 Nov 4;11:546. doi: 10.1186/1471-2105-11-546.

PMID:
21050468
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.

Datta S, Datta S.

BMC Bioinformatics. 2006 Aug 31;7:397.

PMID:
16945146
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Knowledge based cluster ensemble for cancer discovery from biomolecular data.

Yu Z, Wongb HS, You J, Yang Q, Liao H.

IEEE Trans Nanobioscience. 2011 Jun;10(2):76-85. doi: 10.1109/TNB.2011.2144997. Epub 2011 Jul 7.

PMID:
21742574
[PubMed - indexed for MEDLINE]
19.

Statistical file matching of flow cytometry data.

Lee G, Finn W, Scott C.

J Biomed Inform. 2011 Aug;44(4):663-76. doi: 10.1016/j.jbi.2011.03.004. Epub 2011 Mar 21.

PMID:
21406248
[PubMed - indexed for MEDLINE]
Free Article
20.

A novel approach for clustering proteomics data using Bayesian fast Fourier transform.

Bensmail H, Golek J, Moody MM, Semmes JO, Haoudi A.

Bioinformatics. 2005 May 15;21(10):2210-24. Epub 2005 Mar 15.

PMID:
15769836
[PubMed - indexed for MEDLINE]
Free Article

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