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Results: 1 to 20 of 99

1.

Overlapping codes within protein-coding sequences.

Itzkovitz S, Hodis E, Segal E.

Genome Res. 2010 Nov;20(11):1582-9. doi: 10.1101/gr.105072.110. Epub 2010 Sep 14.

PMID:
20841429
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The genetic code is nearly optimal for allowing additional information within protein-coding sequences.

Itzkovitz S, Alon U.

Genome Res. 2007 Apr;17(4):405-12. Epub 2007 Feb 9.

PMID:
17293451
[PubMed - indexed for MEDLINE]
Free PMC Article
3.
4.

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.

Lin MF, Kheradpour P, Washietl S, Parker BJ, Pedersen JS, Kellis M.

Genome Res. 2011 Nov;21(11):1916-28. doi: 10.1101/gr.108753.110. Epub 2011 Oct 12.

PMID:
21994248
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genomic structures of viral agents in relation to the biosynthesis of selenoproteins.

Taylor EW, Nadimpalli RG, Ramanathan CS.

Biol Trace Elem Res. 1997 Jan;56(1):63-91.

PMID:
9152512
[PubMed - indexed for MEDLINE]
6.

A basis for new approaches to the chemotherapy of AIDS: novel genes in HIV-1 potentially encode selenoproteins expressed by ribosomal frameshifting and termination suppression.

Taylor EW, Ramanathan CS, Jalluri RK, Nadimpalli RG.

J Med Chem. 1994 Aug 19;37(17):2637-54.

PMID:
8064794
[PubMed - indexed for MEDLINE]
7.
8.

Overlapping genetic codes for overlapping frameshifted genes in Testudines, and Lepidochelys olivacea as special case.

Seligmann H.

Comput Biol Chem. 2012 Dec;41:18-34. doi: 10.1016/j.compbiolchem.2012.08.002. Epub 2012 Aug 14.

PMID:
23137449
[PubMed - indexed for MEDLINE]
9.

The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations.

Shen X, Ren J, Cui Z, Sha Z, Wang B, Xiang J, Liu B.

Gene. 2007 Nov 15;403(1-2):98-109. Epub 2007 Jul 14.

PMID:
17890021
[PubMed - indexed for MEDLINE]
10.

transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.

Bininda-Emonds OR.

BMC Bioinformatics. 2005 Jun 22;6:156.

PMID:
15969769
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Multiple sequence alignments of partially coding nucleic acid sequences.

Stocsits RR, Hofacker IL, Fried C, Stadler PF.

BMC Bioinformatics. 2005 Jun 28;6:160.

PMID:
15985156
[PubMed - indexed for MEDLINE]
Free PMC Article
12.
13.

Polycistronic peptide coding genes in eukaryotes--how widespread are they?

Tautz D.

Brief Funct Genomic Proteomic. 2009 Jan;8(1):68-74. doi: 10.1093/bfgp/eln054. Epub 2008 Dec 12. Review.

PMID:
19074495
[PubMed - indexed for MEDLINE]
Free Article
14.

Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.

Smith DR, Doucette-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T, Bashirzadeh R, Blakely D, Cook R, Gilbert K, Harrison D, Hoang L, Keagle P, Lumm W, Pothier B, Qiu D, Spadafora R, Vicaire R, Wang Y, Wierzbowski J, Gibson R, Jiwani N, Caruso A, Bush D, Reeve JN, et al.

J Bacteriol. 1997 Nov;179(22):7135-55.

PMID:
9371463
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Comparative annotation of viral genomes with non-conserved gene structure.

de Groot S, Mailund T, Hein J.

Bioinformatics. 2007 May 1;23(9):1080-9. Epub 2007 Mar 6.

PMID:
17341494
[PubMed - indexed for MEDLINE]
Free Article
16.

Expression of mitochondrial protein-coding genes in Tetrahymena pyriformis.

Edqvist J, Burger G, Gray MW.

J Mol Biol. 2000 Mar 24;297(2):381-93.

PMID:
10715208
[PubMed - indexed for MEDLINE]
17.

Overlapping genes coded in the 3'-to-5'-direction in mitochondrial genes and 3'-to-5' polymerization of non-complementary RNA by an 'invertase'.

Seligmann H.

J Theor Biol. 2012 Dec 21;315:38-52. doi: 10.1016/j.jtbi.2012.08.044. Epub 2012 Sep 17.

PMID:
22995821
[PubMed - indexed for MEDLINE]
18.

Detecting overlapping coding sequences with pairwise alignments.

Firth AE, Brown CM.

Bioinformatics. 2005 Feb 1;21(3):282-92. Epub 2004 Sep 3.

PMID:
15347574
[PubMed - indexed for MEDLINE]
Free Article
19.

An evolutionary model for protein-coding regions with conserved RNA structure.

Pedersen JS, Forsberg R, Meyer IM, Hein J.

Mol Biol Evol. 2004 Oct;21(10):1913-22. Epub 2004 Jun 30.

PMID:
15229291
[PubMed - indexed for MEDLINE]
Free Article
20.

Using hidden Markov models and observed evolution to annotate viral genomes.

McCauley S, Hein J.

Bioinformatics. 2006 Jun 1;22(11):1308-16. Epub 2006 Apr 13.

PMID:
16613911
[PubMed - indexed for MEDLINE]
Free Article

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