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Results: 1 to 20 of 188

1.

Protein kinase target discovery from genome-wide messenger RNA expression profiling.

Ma'ayan A, He JC.

Mt Sinai J Med. 2010 Jul-Aug;77(4):345-9. doi: 10.1002/msj.20192.

PMID:
20687179
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Generation of p53 target database via integration of microarray and global p53 DNA-binding site analysis.

Liu S, Mirza A, Wang L.

Methods Mol Biol. 2004;281:33-54.

PMID:
15220520
[PubMed - indexed for MEDLINE]
3.

Target gene identification from expression array data by promoter analysis.

Werner T.

Biomol Eng. 2001 Mar;17(3):87-94. Review.

PMID:
11222983
[PubMed - indexed for MEDLINE]
4.
5.

Integration of cap analysis of gene expression and chromatin immunoprecipitation analysis on array reveals genome-wide androgen receptor signaling in prostate cancer cells.

Takayama K, Tsutsumi S, Katayama S, Okayama T, Horie-Inoue K, Ikeda K, Urano T, Kawazu C, Hasegawa A, Ikeo K, Gojyobori T, Ouchi Y, Hayashizaki Y, Aburatani H, Inoue S.

Oncogene. 2011 Feb 3;30(5):619-30. doi: 10.1038/onc.2010.436. Epub 2010 Oct 4.

PMID:
20890304
[PubMed - indexed for MEDLINE]
6.

An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.

Qin H, Chan MW, Liyanarachchi S, Balch C, Potter D, Souriraj IJ, Cheng AS, Agosto-Perez FJ, Nikonova EV, Yan PS, Lin HJ, Nephew KP, Saltz JH, Showe LC, Huang TH, Davuluri RV.

BMC Syst Biol. 2009 Jul 17;3:73. doi: 10.1186/1752-0509-3-73.

PMID:
19615063
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

[Transcriptomes for serial analysis of gene expression].

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French.

PMID:
12645300
[PubMed - indexed for MEDLINE]
8.

Rationale and study design of the CardioGene Study: genomics of in-stent restenosis.

Ganesh SK, Skelding KA, Mehta L, O'Neill K, Joo J, Zheng G, Goldstein J, Simari R, Billings E, Geller NL, Holmes D, O'Neill WW, Nabel EG.

Pharmacogenomics. 2004 Oct;5(7):952-1004.

PMID:
15469413
[PubMed - indexed for MEDLINE]
9.

Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers.

Chen EY, Xu H, Gordonov S, Lim MP, Perkins MH, Ma'ayan A.

Bioinformatics. 2012 Jan 1;28(1):105-11. doi: 10.1093/bioinformatics/btr625. Epub 2011 Nov 10.

PMID:
22080467
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide analysis of factors regulating gene expression in liver.

Teufel A, Weinmann A, Krupp M, Budinger M, Galle PR.

Gene. 2007 Mar 15;389(2):114-21. Epub 2006 Nov 7.

PMID:
17174484
[PubMed - indexed for MEDLINE]
11.

Analyses of p53 target genes in the human genome by bioinformatic and microarray approaches.

Wang L, Wu Q, Qiu P, Mirza A, McGuirk M, Kirschmeier P, Greene JR, Wang Y, Pickett CB, Liu S.

J Biol Chem. 2001 Nov 23;276(47):43604-10. Epub 2001 Sep 24.

PMID:
11571296
[PubMed - indexed for MEDLINE]
Free Article
12.

Identifying regulatory networks by combinatorial analysis of promoter elements.

Pilpel Y, Sudarsanam P, Church GM.

Nat Genet. 2001 Oct;29(2):153-9.

PMID:
11547334
[PubMed - indexed for MEDLINE]
13.

Integrated biochemical and computational approach identifies BCL6 direct target genes controlling multiple pathways in normal germinal center B cells.

Basso K, Saito M, Sumazin P, Margolin AA, Wang K, Lim WK, Kitagawa Y, Schneider C, Alvarez MJ, Califano A, Dalla-Favera R.

Blood. 2010 Feb 4;115(5):975-84. doi: 10.1182/blood-2009-06-227017. Epub 2009 Dec 3.

PMID:
19965633
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data.

Seifert M, Keilwagen J, Strickert M, Grosse I.

Bioinformatics. 2009 Aug 15;25(16):2118-25. doi: 10.1093/bioinformatics/btp276. Epub 2009 Apr 28.

PMID:
19401402
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

[Experimental identification of drugs with function of targeted up-regulating ID4 expression: bioinformatics-based prediction and preliminary validation].

Yang B, Lu XC, Liu LH, Zhu HL, Chi XH, Yao SQ, Lou FD, Yu L.

Zhonghua Yi Xue Za Zhi. 2009 Jun 23;89(24):1714-6. Chinese.

PMID:
19957534
[PubMed - indexed for MEDLINE]
16.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

PMID:
18426580
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Computational and experimental approaches for modeling gene regulatory networks.

Goutsias J, Lee NH.

Curr Pharm Des. 2007;13(14):1415-36. Review.

PMID:
17504165
[PubMed - indexed for MEDLINE]
18.

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory.

Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J.

BMC Bioinformatics. 2007 Aug 14;8:299.

PMID:
17697349
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Advances in RIP-chip analysis : RNA-binding protein immunoprecipitation-microarray profiling.

Baroni TE, Chittur SV, George AD, Tenenbaum SA.

Methods Mol Biol. 2008;419:93-108. doi: 10.1007/978-1-59745-033-1_6.

PMID:
18369977
[PubMed - indexed for MEDLINE]
20.

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416. doi: 10.1186/1471-2105-9-416.

PMID:
18837990
[PubMed - indexed for MEDLINE]
Free PMC Article

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