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Dominant and diet-responsive groups of bacteria within the human colonic microbiota.

Walker AW, Ince J, Duncan SH, Webster LM, Holtrop G, Ze X, Brown D, Stares MD, Scott P, Bergerat A, Louis P, McIntosh F, Johnstone AM, Lobley GE, Parkhill J, Flint HJ.

ISME J. 2011 Feb;5(2):220-30. doi: 10.1038/ismej.2010.118. Epub 2010 Aug 5.


Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects.

Martínez I, Kim J, Duffy PR, Schlegel VL, Walter J.

PLoS One. 2010 Nov 29;5(11):e15046. doi: 10.1371/journal.pone.0015046.


Phylotypes related to Ruminococcus bromii are abundant in the large bowel of humans and increase in response to a diet high in resistant starch.

Abell GC, Cooke CM, Bennett CN, Conlon MA, McOrist AL.

FEMS Microbiol Ecol. 2008 Dec;66(3):505-15. doi: 10.1111/j.1574-6941.2008.00527.x. Epub 2008 Jun 24.


Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men.

Salonen A, Lahti L, Salojärvi J, Holtrop G, Korpela K, Duncan SH, Date P, Farquharson F, Johnstone AM, Lobley GE, Louis P, Flint HJ, de Vos WM.

ISME J. 2014 Nov;8(11):2218-30. doi: 10.1038/ismej.2014.63. Epub 2014 Apr 24.


Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon.

Ze X, Duncan SH, Louis P, Flint HJ.

ISME J. 2012 Aug;6(8):1535-43. doi: 10.1038/ismej.2012.4. Epub 2012 Feb 16.


Dietary resistant and butyrylated starches have different effects on the faecal bacterial flora of azoxymethane-treated rats.

J Abell GC, Christophersen CT, McOrist AL, Clarke JM.

Br J Nutr. 2011 May;105(10):1480-5. doi: 10.1017/S0007114510005349. Epub 2011 Jan 24.


The impact of nutrition on the human microbiome.

Flint HJ.

Nutr Rev. 2012 Aug;70 Suppl 1:S10-3. doi: 10.1111/j.1753-4887.2012.00499.x. Review.


Phylogenetic distribution of genes encoding β-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities.

McIntosh FM, Maison N, Holtrop G, Young P, Stevens VJ, Ince J, Johnstone AM, Lobley GE, Flint HJ, Louis P.

Environ Microbiol. 2012 Aug;14(8):1876-87. doi: 10.1111/j.1462-2920.2012.02711.x. Epub 2012 Feb 24.


Resistant starches protect against colonic DNA damage and alter microbiota and gene expression in rats fed a Western diet.

Conlon MA, Kerr CA, McSweeney CS, Dunne RA, Shaw JM, Kang S, Bird AR, Morell MK, Lockett TJ, Molloy PL, Regina A, Toden S, Clarke JM, Topping DL.

J Nutr. 2012 May;142(5):832-40. doi: 10.3945/jn.111.147660. Epub 2012 Mar 28.


Effects of resistant starch on the colon in healthy volunteers: possible implications for cancer prevention.

Hylla S, Gostner A, Dusel G, Anger H, Bartram HP, Christl SU, Kasper H, Scheppach W.

Am J Clin Nutr. 1998 Jan;67(1):136-42.


A diet high in resistant starch modulates microbiota composition, SCFA concentrations, and gene expression in pig intestine.

Haenen D, Zhang J, Souza da Silva C, Bosch G, van der Meer IM, van Arkel J, van den Borne JJ, Pérez Gutiérrez O, Smidt H, Kemp B, Müller M, Hooiveld GJ.

J Nutr. 2013 Mar;143(3):274-83. doi: 10.3945/jn.112.169672. Epub 2013 Jan 16.


Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.

De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S, Collini S, Pieraccini G, Lionetti P.

Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14691-6. doi: 10.1073/pnas.1005963107. Epub 2010 Aug 2.


Effects of resistant starch type III polymorphs on human colon microbiota and short chain fatty acids in human gut models.

Lesmes U, Beards EJ, Gibson GR, Tuohy KM, Shimoni E.

J Agric Food Chem. 2008 Jul 9;56(13):5415-21. doi: 10.1021/jf800284d. Epub 2008 Jun 11.


High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health.

Russell WR, Gratz SW, Duncan SH, Holtrop G, Ince J, Scobbie L, Duncan G, Johnstone AM, Lobley GE, Wallace RJ, Duthie GG, Flint HJ.

Am J Clin Nutr. 2011 May;93(5):1062-72. doi: 10.3945/ajcn.110.002188. Epub 2011 Mar 9.


Changes in bowel microbiota induced by feeding weanlings resistant starch stimulate transcriptomic and physiological responses.

Young W, Roy NC, Lee J, Lawley B, Otter D, Henderson G, McCann MJ, Tannock GW.

Appl Environ Microbiol. 2012 Sep;78(18):6656-64. doi: 10.1128/AEM.01536-12. Epub 2012 Jul 13.


Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing.

Kovatcheva-Datchary P, Egert M, Maathuis A, Rajilić-Stojanović M, de Graaf AA, Smidt H, de Vos WM, Venema K.

Environ Microbiol. 2009 Apr;11(4):914-26. doi: 10.1111/j.1462-2920.2008.01815.x. Epub 2008 Dec 8.


The species composition of the human intestinal microbiota differs between particle-associated and liquid phase communities.

Walker AW, Duncan SH, Harmsen HJ, Holtrop G, Welling GW, Flint HJ.

Environ Microbiol. 2008 Dec;10(12):3275-83. doi: 10.1111/j.1462-2920.2008.01717.x. Epub 2008 Aug 15.


Effect of dietary resistant starch and protein on colonic fermentation and intestinal tumourigenesis in rats.

Le Leu RK, Brown IL, Hu Y, Morita T, Esterman A, Young GP.

Carcinogenesis. 2007 Feb;28(2):240-5. Epub 2006 Dec 13.

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