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Items: 1 to 20 of 105


POLYVIEW-MM: web-based platform for animation and analysis of molecular simulations.

Porollo A, Meller J.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W662-6. doi: 10.1093/nar/gkq445. Epub 2010 May 26.


POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins.

Porollo AA, Adamczak R, Meller J.

Bioinformatics. 2004 Oct 12;20(15):2460-2. Epub 2004 Apr 8.


NMSim web server: integrated approach for normal mode-based geometric simulations of biologically relevant conformational transitions in proteins.

Krüger DM, Ahmed A, Gohlke H.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W310-6. doi: 10.1093/nar/gks478. Epub 2012 Jun 4.


DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins.

Tan KP, Varadarajan R, Madhusudhan MS.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W242-8. doi: 10.1093/nar/gkr356. Epub 2011 May 16.


AISMIG--an interactive server-side molecule image generator.

Bohne-Lang A, Groch WD, Ranzinger R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W705-9.


MutDB services: interactive structural analysis of mutation data.

Dantzer J, Moad C, Heiland R, Mooney S.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W311-4.


The PredictProtein server.

Rost B, Yachdav G, Liu J.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W321-6.


CMView: interactive contact map visualization and analysis.

Vehlow C, Stehr H, Winkelmann M, Duarte JM, Petzold L, Dinse J, Lappe M.

Bioinformatics. 2011 Jun 1;27(11):1573-4. doi: 10.1093/bioinformatics/btr163. Epub 2011 Apr 5.


Protein Peeling 2: a web server to convert protein structures into series of protein units.

Gelly JC, Etchebest C, Hazout S, de Brevern AG.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W75-8.


DescFold: a web server for protein fold recognition.

Yan RX, Si JN, Wang C, Zhang Z.

BMC Bioinformatics. 2009 Dec 14;10:416. doi: 10.1186/1471-2105-10-416.


MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations.

Hospital A, Andrio P, Fenollosa C, Cicin-Sain D, Orozco M, Gelpí JL.

Bioinformatics. 2012 May 1;28(9):1278-9. doi: 10.1093/bioinformatics/bts139. Epub 2012 Mar 21.


SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.

Teyra J, Doms A, Schroeder M, Pisabarro MT.

BMC Bioinformatics. 2006 Mar 2;7:104.


ProKware: integrated software for presenting protein structural properties in protein tertiary structures.

Hung JH, Huang HD, Lee TY.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W89-94.


MPlot--a server to analyze and visualize tertiary structure contacts and geometrical features of helical membrane proteins.

Rose A, Goede A, Hildebrand PW.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W602-8. doi: 10.1093/nar/gkq401. Epub 2010 May 19.


ProSAT2--Protein Structure Annotation Server.

Gabdoulline RR, Ulbrich S, Richter S, Wade RC.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W79-83.


iFold: a platform for interactive folding simulations of proteins.

Sharma S, Ding F, Nie H, Watson D, Unnithan A, Lopp J, Pozefsky D, Dokholyan NV.

Bioinformatics. 2006 Nov 1;22(21):2693-4. Epub 2006 Aug 29.


fpocket: online tools for protein ensemble pocket detection and tracking.

Schmidtke P, Le Guilloux V, Maupetit J, Tufféry P.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W582-9. doi: 10.1093/nar/gkq383. Epub 2010 May 16.


PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure.

Pietal MJ, Tuszynska I, Bujnicki JM.

Bioinformatics. 2007 Jun 1;23(11):1429-30. Epub 2007 Mar 30.


APID2NET: unified interactome graphic analyzer.

Hernandez-Toro J, Prieto C, De las Rivas J.

Bioinformatics. 2007 Sep 15;23(18):2495-7. Epub 2007 Jul 21.

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