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Items: 1 to 20 of 114

1.

SIMCOMP/SUBCOMP: chemical structure search servers for network analyses.

Hattori M, Tanaka N, Kanehisa M, Goto S.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W652-6. doi: 10.1093/nar/gkq367. Epub 2010 May 11.

2.

KEGG Atlas mapping for global analysis of metabolic pathways.

Okuda S, Yamada T, Hamajima M, Itoh M, Katayama T, Bork P, Goto S, Kanehisa M.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W423-6. doi: 10.1093/nar/gkn282. Epub 2008 May 13.

3.

From genomics to chemical genomics: new developments in KEGG.

Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D354-7.

4.

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor.

Zhang JD, Wiemann S.

Bioinformatics. 2009 Jun 1;25(11):1470-1. doi: 10.1093/bioinformatics/btp167. Epub 2009 Mar 23.

5.

Chemical substructure search in SQL.

Golovin A, Henrick K.

J Chem Inf Model. 2009 Jan;49(1):22-7. doi: 10.1021/ci8003013.

PMID:
19072559
6.

KEGG for linking genomes to life and the environment.

Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y.

Nucleic Acids Res. 2008 Jan;36(Database issue):D480-4. Epub 2007 Dec 12.

7.

The KEGG databases at GenomeNet.

Kanehisa M, Goto S, Kawashima S, Nakaya A.

Nucleic Acids Res. 2002 Jan 1;30(1):42-6.

8.

metaSHARK: a WWW platform for interactive exploration of metabolic networks.

Hyland C, Pinney JW, McConkey GA, Westhead DR.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W725-8.

9.

Representation and searching of carbohydrate structures using graph-theoretic techniques.

Bruno IJ, Kemp NM, Artymiuk PJ, Willett P.

Carbohydr Res. 1997 Oct 28;304(1):61-7.

PMID:
9403995
10.

SING: subgraph search in non-homogeneous graphs.

Di Natale R, Ferro A, Giugno R, Mongiovì M, Pulvirenti A, Shasha D.

BMC Bioinformatics. 2010 Feb 19;11:96. doi: 10.1186/1471-2105-11-96.

11.

Gene annotation and pathway mapping in KEGG.

Aoki-Kinoshita KF, Kanehisa M.

Methods Mol Biol. 2007;396:71-91.

PMID:
18025687
12.
13.

ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.

Pitkänen E, Akerlund A, Rantanen A, Jouhten P, Ukkonen E.

J Integr Bioinform. 2008 Aug 25;5(2). doi: 10.2390/biecoll-jib-2008-102.

PMID:
20134058
14.

MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks.

Cottret L, Wildridge D, Vinson F, Barrett MP, Charles H, Sagot MF, Jourdan F.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W132-7. doi: 10.1093/nar/gkq312. Epub 2010 May 5.

15.
16.

The KEGG resource for deciphering the genome.

Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D277-80.

17.

MetNetAligner: a web service tool for metabolic network alignments.

Cheng Q, Harrison R, Zelikovsky A.

Bioinformatics. 2009 Aug 1;25(15):1989-90. doi: 10.1093/bioinformatics/btp287. Epub 2009 May 4.

18.

MyBioNet: interactively visualize, edit and merge biological networks on the web.

Huang D, Huang Y, Bai Y, Chen D, Hofestädt R, Klukas C, Chen M.

Bioinformatics. 2011 Dec 1;27(23):3321-2. doi: 10.1093/bioinformatics/btr557. Epub 2011 Oct 7.

19.

KEGG as a glycome informatics resource.

Hashimoto K, Goto S, Kawano S, Aoki-Kinoshita KF, Ueda N, Hamajima M, Kawasaki T, Kanehisa M.

Glycobiology. 2006 May;16(5):63R-70R. Epub 2005 Jul 13. Review.

20.

KEGG-based pathway visualization tool for complex omics data.

Arakawa K, Kono N, Yamada Y, Mori H, Tomita M.

In Silico Biol. 2005;5(4):419-23.

PMID:
16268787
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