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Results: 1 to 20 of 100

1.

Gas-phase rearrangements do not affect site localization reliability in phosphoproteomics data sets.

Aguiar M, Haas W, Beausoleil SA, Rush J, Gygi SP.

J Proteome Res. 2010 Jun 4;9(6):3103-7. doi: 10.1021/pr1000225.

PMID:
20377248
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment.

Kelstrup CD, Hekmat O, Francavilla C, Olsen JV.

J Proteome Res. 2011 Jul 1;10(7):2937-48. doi: 10.1021/pr200154t. Epub 2011 Apr 28.

PMID:
21526838
[PubMed - indexed for MEDLINE]
3.

Automated and high confidence protein phosphorylation site localization using complementary collision-activated dissociation and electron transfer dissociation tandem mass spectrometry.

Hansen TA, Sylvester M, Jensen ON, Kjeldsen F.

Anal Chem. 2012 Nov 20;84(22):9694-9. doi: 10.1021/ac302364r. Epub 2012 Oct 30.

PMID:
23061748
[PubMed - indexed for MEDLINE]
4.

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.

Chi A, Huttenhower C, Geer LY, Coon JJ, Syka JE, Bai DL, Shabanowitz J, Burke DJ, Troyanskaya OG, Hunt DF.

Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2193-8. Epub 2007 Feb 7.

PMID:
17287358
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Electron transfer dissociation in conjunction with collision activation to investigate the Drosophila melanogaster phosphoproteome.

Domon B, Bodenmiller B, Carapito C, Hao Z, Huehmer A, Aebersold R.

J Proteome Res. 2009 Jun;8(6):2633-9. doi: 10.1021/pr800834e.

PMID:
19435317
[PubMed - indexed for MEDLINE]
6.

Evaluation of gas-phase rearrangement and competing fragmentation reactions on protein phosphorylation site assignment using collision induced dissociation-MS/MS and MS3.

Palumbo AM, Reid GE.

Anal Chem. 2008 Dec 15;80(24):9735-47. doi: 10.1021/ac801768s.

PMID:
19012417
[PubMed - indexed for MEDLINE]
7.

Tandem mass spectrometry strategies for phosphoproteome analysis.

Palumbo AM, Smith SA, Kalcic CL, Dantus M, Stemmer PM, Reid GE.

Mass Spectrom Rev. 2011 Jul-Aug;30(4):600-25. doi: 10.1002/mas.20310. Epub 2011 Feb 3. Review.

PMID:
21294150
[PubMed - indexed for MEDLINE]
9.

Evaluation of HCD- and CID-type fragmentation within their respective detection platforms for murine phosphoproteomics.

Jedrychowski MP, Huttlin EL, Haas W, Sowa ME, Rad R, Gygi SP.

Mol Cell Proteomics. 2011 Dec;10(12):M111.009910. doi: 10.1074/mcp.M111.009910. Epub 2011 Sep 13.

PMID:
21917720
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

Molina H, Horn DM, Tang N, Mathivanan S, Pandey A.

Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2199-204. Epub 2007 Feb 7.

PMID:
17287340
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Enhanced characterization of singly protonated phosphopeptide ions by femtosecond laser-induced ionization/dissociation tandem mass spectrometry (fs-LID-MS/MS).

Smith SA, Kalcic CL, Safran KA, Stemmer PM, Dantus M, Reid GE.

J Am Soc Mass Spectrom. 2010 Dec;21(12):2031-40. doi: 10.1016/j.jasms.2010.08.016. Epub 2010 Oct 1.

PMID:
20888783
[PubMed - indexed for MEDLINE]
Free Article
12.

Comparison of alternative MS/MS and bioinformatics approaches for confident phosphorylation site localization.

Wiese H, Kuhlmann K, Wiese S, Stoepel NS, Pawlas M, Meyer HE, Stephan C, Eisenacher M, Drepper F, Warscheid B.

J Proteome Res. 2014 Feb 7;13(2):1128-37. doi: 10.1021/pr400402s. Epub 2014 Jan 3.

PMID:
24364495
[PubMed - indexed for MEDLINE]
13.

Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.

Nagaraj N, D'Souza RC, Cox J, Olsen JV, Mann M.

J Proteome Res. 2010 Dec 3;9(12):6786-94. doi: 10.1021/pr100637q. Epub 2010 Oct 26. Erratum in: J Proteome Res. 2012 Jun 1;11(6):3506-8.

PMID:
20873877
[PubMed - indexed for MEDLINE]
14.

Occurrence and detection of phosphopeptide isomers in large-scale phosphoproteomics experiments.

Courcelles M, Bridon G, Lemieux S, Thibault P.

J Proteome Res. 2012 Jul 6;11(7):3753-65. doi: 10.1021/pr300229m. Epub 2012 Jun 22.

PMID:
22668510
[PubMed - indexed for MEDLINE]
15.

High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.

Madsen JA, Xu H, Robinson MR, Horton AP, Shaw JB, Giles DK, Kaoud TS, Dalby KN, Trent MS, Brodbelt JS.

Mol Cell Proteomics. 2013 Sep;12(9):2604-14. doi: 10.1074/mcp.O113.028258. Epub 2013 May 21.

PMID:
23695934
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Comprehensive phosphoproteome analysis of INS-1 pancreatic β-cells using various digestion strategies coupled with liquid chromatography-tandem mass spectrometry.

Han D, Moon S, Kim Y, Ho WK, Kim K, Kang Y, Jun H, Kim Y.

J Proteome Res. 2012 Apr 6;11(4):2206-23. doi: 10.1021/pr200990b. Epub 2012 Mar 14.

PMID:
22276854
[PubMed - indexed for MEDLINE]
17.
18.

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry.

Swaney DL, Wenger CD, Thomson JA, Coon JJ.

Proc Natl Acad Sci U S A. 2009 Jan 27;106(4):995-1000. doi: 10.1073/pnas.0811964106. Epub 2009 Jan 14.

PMID:
19144917
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Improvement of phosphoproteome analyses using FAIMS and decision tree fragmentation. application to the insulin signaling pathway in Drosophila melanogaster S2 cells.

Bridon G, Bonneil E, Muratore-Schroeder T, Caron-Lizotte O, Thibault P.

J Proteome Res. 2012 Feb 3;11(2):927-40. doi: 10.1021/pr200722s. Epub 2011 Dec 1.

PMID:
22059388
[PubMed - indexed for MEDLINE]
20.

Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry.

Sweet SM, Bailey CM, Cunningham DL, Heath JK, Cooper HJ.

Mol Cell Proteomics. 2009 May;8(5):904-12. doi: 10.1074/mcp.M800451-MCP200. Epub 2009 Jan 8.

PMID:
19131326
[PubMed - indexed for MEDLINE]
Free PMC Article

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