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Results: 1 to 20 of 74

1.

Strategies for enhanced annotation of a microarray probe set.

Powers TR, Virk SM, Serrano EE.

Int J Bioinform Res Appl. 2010;6(2):163-78.

PMID:
20223738
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID:
15661078
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data.

van den Berg BH, Thanthiriwatte C, Manda P, Bridges SM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S9. doi: 10.1186/1471-2105-10-S11-S9.

PMID:
19811693
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data.

Yin J, McLoughlin S, Jeffery IB, Glaviano A, Kennedy B, Higgins DG.

BMC Genomics. 2010 Jan 20;11:50. doi: 10.1186/1471-2164-11-50.

PMID:
20089164
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.

Jaksik R, Polańska J, Herok R, Rzeszowska-Wolny J.

Acta Biochim Pol. 2009;56(2):271-7. Epub 2009 May 12.

PMID:
19436837
[PubMed - indexed for MEDLINE]
Free Article
6.

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization.

Glaab E, Garibaldi JM, Krasnogor N.

BMC Bioinformatics. 2009 Oct 28;10:358. doi: 10.1186/1471-2105-10-358.

PMID:
19863798
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A web-based platform for rice microarray annotation and data analysis.

Chen D, Zhang F, Yuan C, Lu J, Li X, Chen M.

Sci China Life Sci. 2010 Dec;53(12):1467-73. doi: 10.1007/s11427-010-4101-6. Epub 2010 Dec 23.

PMID:
21181349
[PubMed - indexed for MEDLINE]
8.

Pathway analysis software: annotation errors and solutions.

Henderson-Maclennan NK, Papp JC, Talbot CC Jr, McCabe ER, Presson AP.

Mol Genet Metab. 2010 Oct-Nov;101(2-3):134-40. doi: 10.1016/j.ymgme.2010.06.005. Epub 2010 Jun 22.

PMID:
20663702
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management.

Maruschke M, Reuter D, Koczan D, Hakenberg OW, Thiesen HJ.

BJU Int. 2011 Jul;108(2 Pt 2):E29-35. doi: 10.1111/j.1464-410X.2010.09794.x. Epub 2011 Mar 16.

PMID:
21435154
[PubMed - indexed for MEDLINE]
10.

Microarray RNA transcriptional profiling: part II. Analytical considerations and annotation.

Ahmed FE.

Expert Rev Mol Diagn. 2006 Sep;6(5):703-15. Review.

PMID:
17009905
[PubMed - indexed for MEDLINE]
11.

Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.

Toleno DM, Renaud G, Wolfsberg TG, Islam M, Wildman DE, Siegmund KD, Hacia JG.

BMC Bioinformatics. 2009 Mar 5;10:77. doi: 10.1186/1471-2105-10-77.

PMID:
19265541
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identification of temporal association rules from time-series microarray data sets.

Nam H, Lee K, Lee D.

BMC Bioinformatics. 2009 Mar 19;10 Suppl 3:S6. doi: 10.1186/1471-2105-10-S3-S6.

PMID:
19344482
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Comprehensive transcriptional profiling of human epidermis, reconstituted epidermal equivalents, and cultured keratinocytes using DNA microarray chips.

Lee DD, Zavadil J, Tomic-Canic M, Blumenberg M.

Methods Mol Biol. 2010;585:193-223. doi: 10.1007/978-1-60761-380-0_15.

PMID:
19908006
[PubMed - indexed for MEDLINE]
14.

Submission of microarray data to public repositories.

Ball CA, Brazma A, Causton H, Chervitz S, Edgar R, Hingamp P, Matese JC, Parkinson H, Quackenbush J, Ringwald M, Sansone SA, Sherlock G, Spellman P, Stoeckert C, Tateno Y, Taylor R, White J, Winegarden N.

PLoS Biol. 2004 Sep;2(9):E317. Epub 2004 Aug 31. No abstract available.

PMID:
15340489
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Functional comparison of microarray data across multiple platforms using the method of percentage of overlapping functions.

Li Z, Kwekel JC, Chen T.

Methods Mol Biol. 2012;802:123-39. doi: 10.1007/978-1-61779-400-1_9.

PMID:
22130878
[PubMed - indexed for MEDLINE]
16.

ArrayIDer: automated structural re-annotation pipeline for DNA microarrays.

van den Berg BH, Konieczka JH, McCarthy FM, Burgess SC.

BMC Bioinformatics. 2009 Jan 23;10:30. doi: 10.1186/1471-2105-10-30.

PMID:
19166590
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

PMID:
18201381
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Critical assessment of microarray data analysis: the 2001 challenge.

Johnson KF, Lin SM.

Bioinformatics. 2001 Sep;17(9):857-8.

PMID:
11590109
[PubMed - indexed for MEDLINE]
Free Article
19.

Identification of novel genes preferentially expressed in the retina using a custom human retina cDNA microarray.

Chowers I, Gunatilaka TL, Farkas RH, Qian J, Hackam AS, Duh E, Kageyama M, Wang C, Vora A, Campochiaro PA, Zack DJ.

Invest Ophthalmol Vis Sci. 2003 Sep;44(9):3732-41.

PMID:
12939286
[PubMed - indexed for MEDLINE]
Free Article
20.

Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis.

Andrews J, Bouffard GG, Cheadle C, Lü J, Becker KG, Oliver B.

Genome Res. 2000 Dec;10(12):2030-43.

PMID:
11116097
[PubMed - indexed for MEDLINE]
Free PMC Article

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