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Results: 1 to 20 of 222

1.

Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae.

Lantermann AB, Straub T, Strålfors A, Yuan GC, Ekwall K, Korber P.

Nat Struct Mol Biol. 2010 Feb;17(2):251-7. doi: 10.1038/nsmb.1741. Epub 2010 Jan 31.

PMID:
20118936
[PubMed - indexed for MEDLINE]
2.

Genome-wide mapping of nucleosome positions in Schizosaccharomyces pombe.

Lantermann A, Strålfors A, Fagerström-Billai F, Korber P, Ekwall K.

Methods. 2009 Jul;48(3):218-25. doi: 10.1016/j.ymeth.2009.02.004. Epub 2009 Feb 20.

PMID:
19233281
[PubMed - indexed for MEDLINE]
3.

Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning.

Moyle-Heyrman G, Zaichuk T, Xi L, Zhang Q, Uhlenbeck OC, Holmgren R, Widom J, Wang JP.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20158-63. doi: 10.1073/pnas.1315809110. Epub 2013 Nov 25.

PMID:
24277842
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome-scale identification of nucleosome positions in S. cerevisiae.

Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ, Rando OJ.

Science. 2005 Jul 22;309(5734):626-30. Epub 2005 Jun 16.

PMID:
15961632
[PubMed - indexed for MEDLINE]
Free Article
5.

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF.

Nature. 2007 Mar 29;446(7135):572-6.

PMID:
17392789
[PubMed - indexed for MEDLINE]
6.

Nitrogen depletion in the fission yeast Schizosaccharomyces pombe causes nucleosome loss in both promoters and coding regions of activated genes.

Kristell C, Orzechowski Westholm J, Olsson I, Ronne H, Komorowski J, Bjerling P.

Genome Res. 2010 Mar;20(3):361-71. doi: 10.1101/gr.098558.109. Epub 2010 Jan 19.

PMID:
20086243
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A high-resolution atlas of nucleosome occupancy in yeast.

Lee W, Tillo D, Bray N, Morse RH, Davis RW, Hughes TR, Nislow C.

Nat Genet. 2007 Oct;39(10):1235-44. Epub 2007 Sep 16.

PMID:
17873876
[PubMed - indexed for MEDLINE]
8.

A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome.

Zhang Z, Wippo CJ, Wal M, Ward E, Korber P, Pugh BF.

Science. 2011 May 20;332(6032):977-80. doi: 10.1126/science.1200508.

PMID:
21596991
[PubMed - indexed for MEDLINE]
Free Article
9.

New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome.

Feng J, Dai X, Xiang Q, Dai Z, Wang J, Deng Y, He C.

BMC Genomics. 2010 Jan 15;11:33. doi: 10.1186/1471-2164-11-33.

PMID:
20078849
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

CHD1 remodelers regulate nucleosome spacing in vitro and align nucleosomal arrays over gene coding regions in S. pombe.

Pointner J, Persson J, Prasad P, Norman-Axelsson U, Strålfors A, Khorosjutina O, Krietenstein N, Svensson JP, Ekwall K, Korber P.

EMBO J. 2012 Nov 28;31(23):4388-403. doi: 10.1038/emboj.2012.289. Epub 2012 Oct 26.

PMID:
23103765
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast.

Sekinger EA, Moqtaderi Z, Struhl K.

Mol Cell. 2005 Jun 10;18(6):735-48.

PMID:
15949447
[PubMed - indexed for MEDLINE]
Free Article
12.

Active nucleosome positioning beyond intrinsic biophysics is revealed by in vitro reconstitution.

Korber P.

Biochem Soc Trans. 2012 Apr;40(2):377-82. doi: 10.1042/BST20110730. Review.

PMID:
22435815
[PubMed - indexed for MEDLINE]
13.

Heat shock factor can activate transcription while bound to nucleosomal DNA in Saccharomyces cerevisiae.

Pederson DS, Fidrych T.

Mol Cell Biol. 1994 Jan;14(1):189-99.

PMID:
8264586
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure.

Berbenetz NM, Nislow C, Brown GW.

PLoS Genet. 2010 Sep 2;6(9):e1001092. doi: 10.1371/journal.pgen.1001092.

PMID:
20824081
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A genome-wide role for CHD remodelling factors and Nap1 in nucleosome disassembly.

Walfridsson J, Khorosjutina O, Matikainen P, Gustafsson CM, Ekwall K.

EMBO J. 2007 Jun 20;26(12):2868-79. Epub 2007 May 17.

PMID:
17510629
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern.

Hughes AL, Jin Y, Rando OJ, Struhl K.

Mol Cell. 2012 Oct 12;48(1):5-15. doi: 10.1016/j.molcel.2012.07.003. Epub 2012 Aug 9.

PMID:
22885008
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Dynamic regulation of nucleosome positioning in the human genome.

Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K.

Cell. 2008 Mar 7;132(5):887-98. doi: 10.1016/j.cell.2008.02.022.

PMID:
18329373
[PubMed - indexed for MEDLINE]
Free Article
18.

Global nucleosome occupancy in yeast.

Bernstein BE, Liu CL, Humphrey EL, Perlstein EO, Schreiber SL.

Genome Biol. 2004;5(9):R62. Epub 2004 Aug 20.

PMID:
15345046
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Two strategies for gene regulation by promoter nucleosomes.

Tirosh I, Barkai N.

Genome Res. 2008 Jul;18(7):1084-91. doi: 10.1101/gr.076059.108. Epub 2008 Apr 30.

PMID:
18448704
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A statistical thermodynamic approach for predicting the sequence-dependent nucleosome positioning along genomes.

Scipioni A, Morosetti S, De Santis P.

Biopolymers. 2009 Dec;91(12):1143-53. doi: 10.1002/bip.21276.

PMID:
19598227
[PubMed - indexed for MEDLINE]

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