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Results: 1 to 20 of 123

1.

Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons.

Dong X, Navratilova P, Fredman D, Drivenes Ø, Becker TS, Lenhard B.

Nucleic Acids Res. 2010 Mar;38(4):1071-85. doi: 10.1093/nar/gkp1124. Epub 2009 Dec 6.

PMID:
19969543
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.

Kassahn KS, Dang VT, Wilkins SJ, Perkins AC, Ragan MA.

Genome Res. 2009 Aug;19(8):1404-18. doi: 10.1101/gr.086827.108. Epub 2009 May 13.

PMID:
19439512
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Comparative genomic analysis of vertebrate Hox3 and Hox4 genes.

Hadrys T, Prince V, Hunter M, Baker R, Rinkwitz S.

J Exp Zool B Mol Dev Evol. 2004 Mar 15;302(2):147-64.

PMID:
15054858
[PubMed - indexed for MEDLINE]
4.

Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - a fundamental feature of vertebrate genomes.

Kikuta H, Fredman D, Rinkwitz S, Lenhard B, Becker TS.

Genome Biol. 2007;8 Suppl 1:S4. Review.

PMID:
18047696
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention.

Hufton AL, Mathia S, Braun H, Georgi U, Lehrach H, Vingron M, Poustka AJ, Panopoulou G.

Genome Res. 2009 Nov;19(11):2036-51. doi: 10.1101/gr.093237.109. Epub 2009 Aug 24.

PMID:
19704032
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Application of comparative genomics to the analysis of vertebrate regulatory elements.

Gilligan P, Venkatesh B.

Brief Funct Genomic Proteomic. 2004 Apr;3(1):7-11.

PMID:
15163354
[PubMed - indexed for MEDLINE]
Free Article
7.

Mammalian BEX, WEX and GASP genes: coding and non-coding chimaerism sustained by gene conversion events.

Winter EE, Ponting CP.

BMC Evol Biol. 2005 Oct 12;5:54.

PMID:
16221301
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Cis-regulatory characterization of sequence conservation surrounding the Hox4 genes.

Punnamoottil B, Herrmann C, Pascual-Anaya J, D'Aniello S, Garcia-Fernàndez J, Akalin A, Becker TS, Rinkwitz S.

Dev Biol. 2010 Apr 15;340(2):269-82. doi: 10.1016/j.ydbio.2010.01.035. Epub 2010 Feb 6.

PMID:
20144609
[PubMed - indexed for MEDLINE]
Free Article
9.

A transcriptional enhancer from the coding region of ADAMTS5.

Barthel KK, Liu X.

PLoS One. 2008 May 14;3(5):e2184. doi: 10.1371/journal.pone.0002184.

PMID:
18478108
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Intergenic, gene terminal, and intragenic CpG islands in the human genome.

Medvedeva YA, Fridman MV, Oparina NJ, Malko DB, Ermakova EO, Kulakovskiy IV, Heinzel A, Makeev VJ.

BMC Genomics. 2010 Jan 19;11:48. doi: 10.1186/1471-2164-11-48.

PMID:
20085634
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparative genomics using fugu: a tool for the identification of conserved vertebrate cis-regulatory elements.

Venkatesh B, Yap WH.

Bioessays. 2005 Jan;27(1):100-7. Review.

PMID:
15612032
[PubMed - indexed for MEDLINE]
12.

Cracking the genome's second code: enhancer detection by combined phylogenetic footprinting and transgenic fish and frog embryos.

Allende ML, Manzanares M, Tena JJ, Feijóo CG, Gómez-Skarmeta JL.

Methods. 2006 Jul;39(3):212-9.

PMID:
16806968
[PubMed - indexed for MEDLINE]
13.

The identification and functional characterisation of conserved regulatory elements in developmental genes.

Dickmeis T, Müller F.

Brief Funct Genomic Proteomic. 2005 Feb;3(4):332-50. Review.

PMID:
15814024
[PubMed - indexed for MEDLINE]
Free Article
14.

Enrichment of regulatory signals in conserved non-coding genomic sequence.

Levy S, Hannenhalli S, Workman C.

Bioinformatics. 2001 Oct;17(10):871-7.

PMID:
11673231
[PubMed - indexed for MEDLINE]
Free Article
15.

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates.

Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engström PG, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Pezeron G, Mourrain P, Ellingsen S, Oates AC, Thisse C, Thisse B, Foucher I, Adolf B, Geling A, Lenhard B, Becker TS.

Genome Res. 2007 May;17(5):545-55. Epub 2007 Mar 26.

PMID:
17387144
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Detecting non-coding selective pressure in coding regions.

Chen H, Blanchette M.

BMC Evol Biol. 2007 Feb 8;7 Suppl 1:S9.

PMID:
17288582
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.

Rambaldi D, Guffanti A, Morandi P, Cassata G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S22.

PMID:
16351749
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Regulatory divergence of the duplicated chromosomal loci sox11a/b by subpartitioning and sequence evolution of enhancers in zebrafish.

Navratilova P, Fredman D, Lenhard B, Becker TS.

Mol Genet Genomics. 2010 Feb;283(2):171-84. doi: 10.1007/s00438-009-0503-1. Epub 2009 Dec 29.

PMID:
20039180
[PubMed - indexed for MEDLINE]
19.

A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts.

de la Calle-Mustienes E, Feijóo CG, Manzanares M, Tena JJ, Rodríguez-Seguel E, Letizia A, Allende ML, Gómez-Skarmeta JL.

Genome Res. 2005 Aug;15(8):1061-72. Epub 2005 Jul 15.

PMID:
16024824
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout.

Moghadam HK, Ferguson MM, Danzmann RG.

BMC Genomics. 2009 Jun 23;10:278. doi: 10.1186/1471-2164-10-278.

PMID:
19549339
[PubMed - indexed for MEDLINE]
Free PMC Article

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