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Items: 1 to 20 of 111

1.

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.

Hansen RS, Thomas S, Sandstrom R, Canfield TK, Thurman RE, Weaver M, Dorschner MO, Gartler SM, Stamatoyannopoulos JA.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):139-44. doi: 10.1073/pnas.0912402107. Epub 2009 Dec 4.

2.

DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states.

White EJ, Emanuelsson O, Scalzo D, Royce T, Kosak S, Oakeley EJ, Weissman S, Gerstein M, Groudine M, Snyder M, Schübeler D.

Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17771-6. Epub 2004 Dec 10.

3.
4.

Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome.

Schwaiger M, Stadler MB, Bell O, Kohler H, Oakeley EJ, Schübeler D.

Genes Dev. 2009 Mar 1;23(5):589-601. doi: 10.1101/gad.511809.

5.

Characterizing the physical genome.

Pollack JR, Iyer VR.

Nat Genet. 2002 Dec;32 Suppl:515-21. Review.

PMID:
12454647
6.

Replication timing of the human genome.

Woodfine K, Fiegler H, Beare DM, Collins JE, McCann OT, Young BD, Debernardi S, Mott R, Dunham I, Carter NP.

Hum Mol Genet. 2004 Jan 15;13(2):191-202. Epub 2003 Nov 25.

7.

Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing.

Schübeler D, Scalzo D, Kooperberg C, van Steensel B, Delrow J, Groudine M.

Nat Genet. 2002 Nov;32(3):438-42. Epub 2002 Sep 30.

PMID:
12355067
8.

High-resolution, genome-wide mapping of chromatin modifications by GMAT.

Roh TY, Zhao K.

Methods Mol Biol. 2008;387:95-108.

PMID:
18287625
9.

Temporal regulation of DNA replication in mammalian cells.

Méndez J.

Crit Rev Biochem Mol Biol. 2009 Sep-Oct;44(5):343-51. doi: 10.1080/10409230903232618. Review. Erratum in: Crit Rev Biochem Mol Biol. 2009 Nov-Dec;44(6):447.

PMID:
19780641
10.

Replication timing and epigenetic reprogramming of gene expression: a two-way relationship?

Göndör A, Ohlsson R.

Nat Rev Genet. 2009 Apr;10(4):269-76. doi: 10.1038/nrg2555.

PMID:
19274048
11.

Human genome replication proceeds through four chromatin states.

Julienne H, Zoufir A, Audit B, Arneodo A.

PLoS Comput Biol. 2013;9(10):e1003233. doi: 10.1371/journal.pcbi.1003233. Epub 2013 Oct 10.

12.

An epigenetic state associated with areas of gene duplication.

Gimelbrant AA, Chess A.

Genome Res. 2006 Jun;16(6):723-9. Epub 2006 May 10. Erratum in: Genome Res. 2006 Aug;16(8):1073.

13.

Global organization of replication time zones of the mouse genome.

Farkash-Amar S, Lipson D, Polten A, Goren A, Helmstetter C, Yakhini Z, Simon I.

Genome Res. 2008 Oct;18(10):1562-70. doi: 10.1101/gr.079566.108. Epub 2008 Jul 30.

14.

High-resolution analysis of DNA replication domain organization across an R/G-band boundary.

Strehl S, LaSalle JM, Lalande M.

Mol Cell Biol. 1997 Oct;17(10):6157-66.

15.

Analysis of DNA replication by fluorescence in situ hybridization.

Boggs BA, Chinault AC.

Methods. 1997 Nov;13(3):259-70. Review.

PMID:
9441852
16.

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome.

Hon G, Ren B, Wang W.

PLoS Comput Biol. 2008 Oct;4(10):e1000201. doi: 10.1371/journal.pcbi.1000201. Epub 2008 Oct 17.

17.

Chromatin domains in higher eukaryotes: insights from genome-wide mapping studies.

de Wit E, van Steensel B.

Chromosoma. 2009 Feb;118(1):25-36. doi: 10.1007/s00412-008-0186-0. Epub 2008 Oct 14. Review.

PMID:
18853173
18.

Dynamic alterations of replication timing in mammalian cells.

Lin CM, Fu H, Martinovsky M, Bouhassira E, Aladjem MI.

Curr Biol. 2003 Jun 17;13(12):1019-28.

19.

Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines.

Baker A, Audit B, Chen CL, Moindrot B, Leleu A, Guilbaud G, Rappailles A, Vaillant C, Goldar A, Mongelard F, d'Aubenton-Carafa Y, Hyrien O, Thermes C, Arneodo A.

PLoS Comput Biol. 2012;8(4):e1002443. doi: 10.1371/journal.pcbi.1002443. Epub 2012 Apr 5.

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