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Items: 1 to 20 of 105

1.

Loss of post-translational modification sites in disease.

Li S, Iakoucheva LM, Mooney SD, Radivojac P.

Pac Symp Biocomput. 2010:337-47.

2.

Correlated mutations: a hallmark of phenotypic amino acid substitutions.

Kowarsch A, Fuchs A, Frishman D, Pagel P.

PLoS Comput Biol. 2010 Sep 16;6(9). pii: e1000923. doi: 10.1371/journal.pcbi.1000923.

3.

Evolutionary constraint and disease associations of post-translational modification sites in human genomes.

Reimand J, Wagih O, Bader GD.

PLoS Genet. 2015 Jan 22;11(1):e1004919. doi: 10.1371/journal.pgen.1004919. eCollection 2015 Jan.

4.

Predicting the protein SUMO modification sites based on Properties Sequential Forward Selection (PSFS).

Liu B, Li S, Wang Y, Lu L, Li Y, Cai Y.

Biochem Biophys Res Commun. 2007 Jun 22;358(1):136-9. Epub 2007 Apr 23.

PMID:
17470363
5.

Automated inference of molecular mechanisms of disease from amino acid substitutions.

Li B, Krishnan VG, Mort ME, Xin F, Kamati KK, Cooper DN, Mooney SD, Radivojac P.

Bioinformatics. 2009 Nov 1;25(21):2744-50. doi: 10.1093/bioinformatics/btp528. Epub 2009 Sep 3.

6.

N-terminal N-myristoylation of proteins: refinement of the sequence motif and its taxon-specific differences.

Maurer-Stroh S, Eisenhaber B, Eisenhaber F.

J Mol Biol. 2002 Apr 5;317(4):523-40.

PMID:
11955007
7.

Post-translational modifications of the basic peroxidase isoenzyme from Zinnia elegans.

Gabaldón C, Gómez-Ros LV, Núñez-Flores MJ, Esteban-Carrasco A, Barceló AR.

Plant Mol Biol. 2007 Sep;65(1-2):43-61. Epub 2007 Jun 22.

PMID:
17588152
8.

PhosphoSitePlus, 2014: mutations, PTMs and recalibrations.

Hornbeck PV, Zhang B, Murray B, Kornhauser JM, Latham V, Skrzypek E.

Nucleic Acids Res. 2015 Jan;43(Database issue):D512-20. doi: 10.1093/nar/gku1267. Epub 2014 Dec 16.

9.

PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation.

Ren J, Jiang C, Gao X, Liu Z, Yuan Z, Jin C, Wen L, Zhang Z, Xue Y, Yao X.

Mol Cell Proteomics. 2010 Apr;9(4):623-34. doi: 10.1074/mcp.M900273-MCP200. Epub 2009 Dec 8.

10.

VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.

Matthiesen R, Trelle MB, Højrup P, Bunkenborg J, Jensen ON.

J Proteome Res. 2005 Nov-Dec;4(6):2338-47.

PMID:
16335983
11.

Disease-associated mutations disrupt functionally important regions of intrinsic protein disorder.

Vacic V, Markwick PR, Oldfield CJ, Zhao X, Haynes C, Uversky VN, Iakoucheva LM.

PLoS Comput Biol. 2012;8(10):e1002709. doi: 10.1371/journal.pcbi.1002709. Epub 2012 Oct 4.

12.

Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.

Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN.

J Proteome Res. 2007 May;6(5):1917-32. Epub 2007 Mar 29.

13.

Structural and functional restraints on the occurrence of single amino acid variations in human proteins.

Gong S, Blundell TL.

PLoS One. 2010 Feb 12;5(2):e9186. doi: 10.1371/journal.pone.0009186.

14.

Computational studies of protein regulation by post-translational phosphorylation.

Narayanan A, Jacobson MP.

Curr Opin Struct Biol. 2009 Apr;19(2):156-63. doi: 10.1016/j.sbi.2009.02.007. Epub 2009 Apr 1. Review.

PMID:
19339172
15.

Human proteins with target sites of multiple post-translational modification types are more prone to be involved in disease.

Huang Q, Chang J, Cheung MK, Nong W, Li L, Lee MT, Kwan HS.

J Proteome Res. 2014 Jun 6;13(6):2735-48. doi: 10.1021/pr401019d. Epub 2014 May 2.

PMID:
24754740
16.

Discarding functional residues from the substitution table improves predictions of active sites within three-dimensional structures.

Gong S, Blundell TL.

PLoS Comput Biol. 2008 Oct 3;4(10):e1000179. doi: 10.1371/journal.pcbi.1000179.

17.

A systematic framework for molecular dynamics simulations of protein post-translational modifications.

Petrov D, Margreitter C, Grandits M, Oostenbrink C, Zagrovic B.

PLoS Comput Biol. 2013;9(7):e1003154. doi: 10.1371/journal.pcbi.1003154. Epub 2013 Jul 18.

18.

SysPTM: a systematic resource for proteomic research on post-translational modifications.

Li H, Xing X, Ding G, Li Q, Wang C, Xie L, Zeng R, Li Y.

Mol Cell Proteomics. 2009 Aug;8(8):1839-49. doi: 10.1074/mcp.M900030-MCP200. Epub 2009 Apr 14.

19.

Defective intracellular transport and processing of JAG1 missense mutations in Alagille syndrome.

Morrissette JD, Colliton RP, Spinner NB.

Hum Mol Genet. 2001 Feb 15;10(4):405-13.

20.

Post-translational regulation of expression and conformation of an immunoglobulin domain in yeast surface display.

Parthasarathy R, Subramanian S, Boder ET, Discher DE.

Biotechnol Bioeng. 2006 Jan 5;93(1):159-68.

PMID:
16161151
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