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Similar articles for PubMed (Select 19850718)

1.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD.

Nucleic Acids Res. 2010 Jan;38(Database issue):D473-9. doi: 10.1093/nar/gkp875. Epub 2009 Oct 22.

2.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Pujar A, Shearer AG, Travers M, Weerasinghe D, Zhang P, Karp PD.

Nucleic Acids Res. 2012 Jan;40(Database issue):D742-53. doi: 10.1093/nar/gkr1014. Epub 2011 Nov 18.

3.

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD.

Nucleic Acids Res. 2008 Jan;36(Database issue):D623-31. Epub 2007 Oct 27.

4.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD.

Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71. doi: 10.1093/nar/gkt1103. Epub 2013 Nov 12.

5.

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tissier C, Zhang P, Karp PD.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D511-6.

6.

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.

Karp PD, Ouzounis CA, Moore-Kochlacs C, Goldovsky L, Kaipa P, Ahrén D, Tsoka S, Darzentas N, Kunin V, López-Bigas N.

Nucleic Acids Res. 2005 Oct 24;33(19):6083-9. Print 2005.

7.

Using the MetaCyc pathway database and the BioCyc database collection.

Caspi R, Karp PD.

Curr Protoc Bioinformatics. 2007 Dec;Chapter 1:Unit1.17. doi: 10.1002/0471250953.bi0117s20.

PMID:
18428679
8.

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

Krieger CJ, Zhang P, Mueller LA, Wang A, Paley S, Arnaud M, Pick J, Rhee SY, Karp PD.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D438-42.

9.

Browsing metabolic and regulatory networks with BioCyc.

Latendresse M, Paley S, Karp PD.

Methods Mol Biol. 2012;804:197-216. doi: 10.1007/978-1-61779-361-5_11.

10.

MetaCyc and AraCyc. Metabolic pathway databases for plant research.

Zhang P, Foerster H, Tissier CP, Mueller L, Paley S, Karp PD, Rhee SY.

Plant Physiol. 2005 May;138(1):27-37.

11.
12.

Data mining in the MetaCyc family of pathway databases.

Karp PD, Paley S, Altman T.

Methods Mol Biol. 2013;939:183-200. doi: 10.1007/978-1-62703-107-3_12.

13.

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.

Karp PD, Paley SM, Krummenacker M, Latendresse M, Dale JM, Lee TJ, Kaipa P, Gilham F, Spaulding A, Popescu L, Altman T, Paulsen I, Keseler IM, Caspi R.

Brief Bioinform. 2010 Jan;11(1):40-79. doi: 10.1093/bib/bbp043. Epub 2009 Dec 2.

14.

Computational Metabolomics Operations at BioCyc.org.

Karp PD, Billington R, Holland TA, Kothari A, Krummenacker M, Weaver D, Latendresse M, Paley S.

Metabolites. 2015 May 22;5(2):291-310. doi: 10.3390/metabo5020291.

15.

The MetaCyc Database.

Karp PD, Riley M, Paley SM, Pellegrini-Toole A.

Nucleic Acids Res. 2002 Jan 1;30(1):59-61.

16.

A survey of metabolic databases emphasizing the MetaCyc family.

Karp PD, Caspi R.

Arch Toxicol. 2011 Sep;85(9):1015-33. doi: 10.1007/s00204-011-0705-2. Epub 2011 Apr 27. Review.

17.

The Pathway Tools software.

Karp PD, Paley S, Romero P.

Bioinformatics. 2002;18 Suppl 1:S225-32.

18.

The integrated microbial genomes system: an expanding comparative analysis resource.

Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Anderson I, Lykidis A, Mavromatis K, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2010 Jan;38(Database issue):D382-90. doi: 10.1093/nar/gkp887. Epub 2009 Oct 28.

19.

New tools at the Candida Genome Database: biochemical pathways and full-text literature search.

Skrzypek MS, Arnaud MB, Costanzo MC, Inglis DO, Shah P, Binkley G, Miyasato SR, Sherlock G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D428-32. doi: 10.1093/nar/gkp836. Epub 2009 Oct 6.

20.

MedicCyc: a biochemical pathway database for Medicago truncatula.

Urbanczyk-Wochniak E, Sumner LW.

Bioinformatics. 2007 Jun 1;23(11):1418-23. Epub 2007 Mar 7.

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