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Results: 1 to 20 of 142

1.

Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging.

van Mameren J, Gross P, Farge G, Hooijman P, Modesti M, Falkenberg M, Wuite GJ, Peterman EJ.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18231-6. doi: 10.1073/pnas.0904322106. Epub 2009 Oct 19.

PMID:
19841258
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching using fluorescence microscopy.

King GA, Gross P, Bockelmann U, Modesti M, Wuite GJ, Peterman EJ.

Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):3859-64. doi: 10.1073/pnas.1213676110. Epub 2013 Feb 19.

PMID:
23431161
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching by single-molecule calorimetry.

Zhang X, Chen H, Le S, Rouzina I, Doyle PS, Yan J.

Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):3865-70. doi: 10.1073/pnas.1213740110. Epub 2013 Feb 19.

PMID:
23431154
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Force spectroscopy and fluorescence microscopy of dsDNA-YOYO-1 complexes: implications for the structure of dsDNA in the overstretching region.

Murade CU, Subramaniam V, Otto C, Bennink ML.

Nucleic Acids Res. 2010 Jun;38(10):3423-31. doi: 10.1093/nar/gkq034. Epub 2010 Feb 2.

PMID:
20129944
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

DNA overstretching in the presence of glyoxal: structural evidence of force-induced DNA melting.

Shokri L, McCauley MJ, Rouzina I, Williams MC.

Biophys J. 2008 Aug;95(3):1248-55. doi: 10.1529/biophysj.108.132688. Epub 2008 Apr 18.

PMID:
18424499
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Coarse-grained simulations of DNA overstretching.

Romano F, Chakraborty D, Doye JP, Ouldridge TE, Louis AA.

J Chem Phys. 2013 Feb 28;138(8):085101. doi: 10.1063/1.4792252.

PMID:
23464177
[PubMed - indexed for MEDLINE]
7.

Transient kinetics measured with force steps discriminate between double-stranded DNA elongation and melting and define the reaction energetics.

Bongini L, Melli L, Lombardi V, Bianco P.

Nucleic Acids Res. 2014 Mar;42(5):3436-49. doi: 10.1093/nar/gkt1297. Epub 2013 Dec 17.

PMID:
24353317
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Salt dependence of the elasticity and overstretching transition of single DNA molecules.

Wenner JR, Williams MC, Rouzina I, Bloomfield VA.

Biophys J. 2002 Jun;82(6):3160-9.

PMID:
12023240
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting.

Williams MC, Wenner JR, Rouzina I, Bloomfield VA.

Biophys J. 2001 Feb;80(2):874-81.

PMID:
11159454
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching.

Williams MC, Wenner JR, Rouzina I, Bloomfield VA.

Biophys J. 2001 Apr;80(4):1932-9.

PMID:
11259306
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Overstretching DNA at 65 pN does not require peeling from free ends or nicks.

Paik DH, Perkins TT.

J Am Chem Soc. 2011 Mar 16;133(10):3219-21. doi: 10.1021/ja108952v. Epub 2011 Jan 5.

PMID:
21207940
[PubMed - indexed for MEDLINE]
12.

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Smith SB, Cui Y, Bustamante C.

Science. 1996 Feb 9;271(5250):795-9.

PMID:
8628994
[PubMed - indexed for MEDLINE]
13.

Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching.

Fu H, Chen H, Zhang X, Qu Y, Marko JF, Yan J.

Nucleic Acids Res. 2011 Apr;39(8):3473-81. doi: 10.1093/nar/gkq1278. Epub 2010 Dec 21.

PMID:
21177651
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Study of force induced melting of dsDNA as a function of length and conformation.

Danilowicz C, Hatch K, Conover A, Ducas T, Gunaratne R, Coljee V, Prentiss M.

J Phys Condens Matter. 2010 Oct 20;22(41):414106. doi: 10.1088/0953-8984/22/41/414106. Epub 2010 Sep 30.

PMID:
21386589
[PubMed - indexed for MEDLINE]
15.

Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements.

Zhang X, Chen H, Fu H, Doyle PS, Yan J.

Proc Natl Acad Sci U S A. 2012 May 22;109(21):8103-8. doi: 10.1073/pnas.1109824109. Epub 2012 Apr 24.

PMID:
22532662
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Tension induces a base-paired overstretched DNA conformation.

Bosaeus N, El-Sagheer AH, Brown T, Smith SB, Akerman B, Bustamante C, Nordén B.

Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15179-84. Epub 2012 Sep 4.

PMID:
22949705
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Secondary structure formation of homopolymeric single-stranded nucleic acids including force and loop entropy: implications for DNA hybridization.

Einert TR, Orland H, Netz RR.

Eur Phys J E Soft Matter. 2011 Jun;34(6):1-15. doi: 10.1140/epje/i2011-11055-2. Epub 2011 Jun 1.

PMID:
21626368
[PubMed - indexed for MEDLINE]
18.

Raman spectroscopy of DNA-metal complexes. II. The thermal denaturation of DNA in the presence of Sr2+, Ba2+, Mg2+, Ca2+, Mn2+, Co2+, Ni2+, and Cd2+.

Duguid JG, Bloomfield VA, Benevides JM, Thomas GJ Jr.

Biophys J. 1995 Dec;69(6):2623-41.

PMID:
8599669
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The structure of DNA overstretched from the 5'5' ends differs from the structure of DNA overstretched from the 3'3' ends.

Danilowicz C, Limouse C, Hatch K, Conover A, Coljee VW, Kleckner N, Prentiss M.

Proc Natl Acad Sci U S A. 2009 Aug 11;106(32):13196-201. doi: 10.1073/pnas.0904729106. Epub 2009 Jul 28.

PMID:
19666582
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Different pulling modes in DNA overstretching: a theoretical analysis.

Marenduzzo D, Orlandini E, Seno F, Trovato A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May;81(5 Pt 1):051926. Epub 2010 May 27.

PMID:
20866280
[PubMed - indexed for MEDLINE]
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