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Items: 1 to 20 of 226

1.

Rational modulation of conformational fluctuations in adenylate kinase reveals a local unfolding mechanism for allostery and functional adaptation in proteins.

Schrank TP, Bolen DW, Hilser VJ.

Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):16984-9. doi: 10.1073/pnas.0906510106. Epub 2009 Sep 21.

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Noncooperative folding of subdomains in adenylate kinase.

Rundqvist L, Adén J, Sparrman T, Wallgren M, Olsson U, Wolf-Watz M.

Biochemistry. 2009 Mar 10;48(9):1911-27. doi: 10.1021/bi8018042.

PMID:
19219996
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Many local motions cooperate to produce the adenylate kinase conformational transition.

Daily MD, Phillips GN Jr, Cui Q.

J Mol Biol. 2010 Jul 16;400(3):618-31. doi: 10.1016/j.jmb.2010.05.015. Epub 2010 May 13.

8.

Structure-function analysis of Escherichia coli MnmG (GidA), a highly conserved tRNA-modifying enzyme.

Shi R, Villarroya M, Ruiz-Partida R, Li Y, Proteau A, Prado S, Moukadiri I, Benítez-Páez A, Lomas R, Wagner J, Matte A, Velázquez-Campoy A, Armengod ME, Cygler M.

J Bacteriol. 2009 Dec;191(24):7614-9. doi: 10.1128/JB.00650-09. Epub 2009 Oct 2.

9.

On the roles of substrate binding and hinge unfolding in conformational changes of adenylate kinase.

Brokaw JB, Chu JW.

Biophys J. 2010 Nov 17;99(10):3420-9. doi: 10.1016/j.bpj.2010.09.040.

10.

Protein folding pathways of adenylate kinase from E. coli: hydrostatic pressure and stopped-flow studies.

Ruan Q, Ruan K, Balny C, Glaser M, Mantulin WW.

Biochemistry. 2001 Dec 4;40(48):14706-14.

PMID:
11724585
11.

Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism.

Arora K, Brooks CL 3rd.

Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18496-501. Epub 2007 Nov 13.

12.

Structurally and catalytically important residues in the phosphate binding loop of adenylate kinase of Escherichia coli.

Reinstein J, Schlichting I, Wittinghofer A.

Biochemistry. 1990 Aug 14;29(32):7451-9.

PMID:
2223776
13.

Structural and energetic factors of the increased thermal stability in a genetically engineered Escherichia coli adenylate kinase.

Burlacu-Miron S, Perrier V, Gilles AM, Pistotnik E, Craescu CT.

J Biol Chem. 1998 Jul 24;273(30):19102-7.

14.

Energetic methods to study bifunctional biotin operon repressor.

Beckett D.

Methods Enzymol. 1998;295:424-50.

PMID:
9750231
15.

Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.

Schuler B, Fürst F, Osterroth F, Steinbacher S, Huber R, Seckler R.

Proteins. 2000 Apr 1;39(1):89-101.

PMID:
10737931
16.

Modulation of a pre-existing conformational equilibrium tunes adenylate kinase activity.

Ådén J, Verma A, Schug A, Wolf-Watz M.

J Am Chem Soc. 2012 Oct 10;134(40):16562-70. doi: 10.1021/ja3032482. Epub 2012 Sep 25.

PMID:
22963267
17.

Thermodynamic effects of proline introduction on protein stability.

Prajapati RS, Das M, Sreeramulu S, Sirajuddin M, Srinivasan S, Krishnamurthy V, Ranjani R, Ramakrishnan C, Varadarajan R.

Proteins. 2007 Feb 1;66(2):480-91.

PMID:
17034035
18.

Conformational transitions in adenylate kinase. Allosteric communication reduces misligation.

Whitford PC, Gosavi S, Onuchic JN.

J Biol Chem. 2008 Jan 25;283(4):2042-8. Epub 2007 Nov 11.

19.

Conformational transitions of adenylate kinase: switching by cracking.

Whitford PC, Miyashita O, Levy Y, Onuchic JN.

J Mol Biol. 2007 Mar 9;366(5):1661-71. Epub 2006 Dec 5.

20.

Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability.

Miller C, Davlieva M, Wilson C, White KI, Couñago R, Wu G, Myers JC, Wittung-Stafshede P, Shamoo Y.

Biophys J. 2010 Aug 4;99(3):887-96. doi: 10.1016/j.bpj.2010.04.076.

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