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Results: 1 to 20 of 1055

1.

Assessing the genomic evidence for conserved transcribed pseudogenes under selection.

Khachane AN, Harrison PM.

BMC Genomics. 2009 Sep 15;10:435. doi: 10.1186/1471-2164-10-435.

PMID:
19754956
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability.

Harrison PM, Zheng D, Zhang Z, Carriero N, Gerstein M.

Nucleic Acids Res. 2005 Apr 28;33(8):2374-83. Print 2005.

PMID:
15860774
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes.

Sakai H, Koyanagi KO, Imanishi T, Itoh T, Gojobori T.

Gene. 2007 Mar 15;389(2):196-203. Epub 2006 Nov 18.

PMID:
17196768
[PubMed - indexed for MEDLINE]
4.

Genomic evidence for non-random endemic populations of decaying exons from mammalian genes.

Morais DD, Harrison PM.

BMC Genomics. 2009 Jul 13;10:309. doi: 10.1186/1471-2164-10-309.

PMID:
19594905
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Nonneutral evolution of the transcribed pseudogene Makorin1-p1 in mice.

Podlaha O, Zhang J.

Mol Biol Evol. 2004 Dec;21(12):2202-9. Epub 2004 Aug 11.

PMID:
15306660
[PubMed - indexed for MEDLINE]
Free Article
6.

Genome-wide survey for biologically functional pseudogenes.

Svensson O, Arvestad L, Lagergren J.

PLoS Comput Biol. 2006 May;2(5):e46. Epub 2006 May 5.

PMID:
16680195
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Analysis of the role of retrotransposition in gene evolution in vertebrates.

Yu Z, Morais D, Ivanga M, Harrison PM.

BMC Bioinformatics. 2007 Aug 24;8:308.

PMID:
17718914
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Numerous potentially functional but non-genic conserved sequences on human chromosome 21.

Dermitzakis ET, Reymond A, Lyle R, Scamuffa N, Ucla C, Deutsch S, Stevenson BJ, Flegel V, Bucher P, Jongeneel CV, Antonarakis SE.

Nature. 2002 Dec 5;420(6915):578-82.

PMID:
12466853
[PubMed - indexed for MEDLINE]
9.

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.

Harrison PM, Hegyi H, Balasubramanian S, Luscombe NM, Bertone P, Echols N, Johnson T, Gerstein M.

Genome Res. 2002 Feb;12(2):272-80.

PMID:
11827946
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes.

Echols N, Harrison P, Balasubramanian S, Luscombe NM, Bertone P, Zhang Z, Gerstein M.

Nucleic Acids Res. 2002 Jun 1;30(11):2515-23.

PMID:
12034841
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference.

Piehler AP, Hellum M, Wenzel JJ, Kaminski E, Haug KB, Kierulf P, Kaminski WE.

BMC Genomics. 2008 Apr 11;9:165. doi: 10.1186/1471-2164-9-165.

PMID:
18405356
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Integrated pseudogene annotation for human chromosome 22: evidence for transcription.

Zheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M.

J Mol Biol. 2005 May 27;349(1):27-45. Epub 2005 Apr 2.

PMID:
15876366
[PubMed - indexed for MEDLINE]
13.

Evidence for the presence of HABP1 pseudogene in multiple locations of mammalian genome.

Majumdar M, Bharadwaj A, Ghosh I, Ramachandran S, Datta K.

DNA Cell Biol. 2002 Oct;21(10):727-35.

PMID:
12443542
[PubMed - indexed for MEDLINE]
14.

Revisiting the missing protein-coding gene catalog of the domestic dog.

Derrien T, Thézé J, Vaysse A, André C, Ostrander EA, Galibert F, Hitte C.

BMC Genomics. 2009 Feb 4;10:62. doi: 10.1186/1471-2164-10-62.

PMID:
19193219
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodents.

Bustamante CD, Nielsen R, Hartl DL.

Mol Biol Evol. 2002 Jan;19(1):110-7.

PMID:
11752196
[PubMed - indexed for MEDLINE]
Free Article
16.

Divergent evolution of the prolactin-inducible protein gene and related genes in the mouse genome.

Osawa M, Horiuchi H, Tian W, Kaneko M.

Gene. 2004 Jan 21;325:179-86.

PMID:
14697523
[PubMed - indexed for MEDLINE]
17.

The dog genome: survey sequencing and comparative analysis.

Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM, Venter JC.

Science. 2003 Sep 26;301(5641):1898-903.

PMID:
14512627
[PubMed - indexed for MEDLINE]
Free Article
18.

Mitochondrial sequence migrated downstream to a nuclear V-ATPase B gene is transcribed but non-functional.

Kubo N, Takano M, Nishiguchi M, Kadowaki K.

Gene. 2001 Jun 27;271(2):193-201.

PMID:
11418240
[PubMed - indexed for MEDLINE]
19.

Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome.

Zhang Z, Harrison P, Gerstein M.

Genome Res. 2002 Oct;12(10):1466-82.

PMID:
12368239
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Initial sequencing and comparative analysis of the mouse genome.

Mouse Genome Sequencing Consortium, Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigó R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf I, Kucherlapati RS, Kulbokas EJ, Kulp D, Landers T, Leger JP, Leonard S, Letunic I, Levine R, Li J, Li M, Lloyd C, Lucas S, Ma B, Maglott DR, Mardis ER, Matthews L, Mauceli E, Mayer JH, McCarthy M, McCombie WR, McLaren S, McLay K, McPherson JD, Meldrim J, Meredith B, Mesirov JP, Miller W, Miner TL, Mongin E, Montgomery KT, Morgan M, Mott R, Mullikin JC, Muzny DM, Nash WE, Nelson JO, Nhan MN, Nicol R, Ning Z, Nusbaum C, O'Connor MJ, Okazaki Y, Oliver K, Overton-Larty E, Pachter L, Parra G, Pepin KH, Peterson J, Pevzner P, Plumb R, Pohl CS, Poliakov A, Ponce TC, Ponting CP, Potter S, Quail M, Reymond A, Roe BA, Roskin KM, Rubin EM, Rust AG, Santos R, Sapojnikov V, Schultz B, Schultz J, Schwartz MS, Schwartz S, Scott C, Seaman S, Searle S, Sharpe T, Sheridan A, Shownkeen R, Sims S, Singer JB, Slater G, Smit A, Smith DR, Spencer B, Stabenau A, Stange-Thomann N, Sugnet C, Suyama M, Tesler G, Thompson J, Torrents D, Trevaskis E, Tromp J, Ucla C, Ureta-Vidal A, Vinson JP, Von Niederhausern AC, Wade CM, Wall M, Weber RJ, Weiss RB, Wendl MC, West AP, Wetterstrand K, Wheeler R, Whelan S, Wierzbowski J, Willey D, Williams S, Wilson RK, Winter E, Worley KC, Wyman D, Yang S, Yang SP, Zdobnov EM, Zody MC, Lander ES.

Nature. 2002 Dec 5;420(6915):520-62.

PMID:
12466850
[PubMed - indexed for MEDLINE]

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