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Results: 1 to 20 of 72

Similar articles for PubMed (Select 19740431)

1.

Allele-specific expression assays using Solexa.

Main BJ, Bickel RD, McIntyre LM, Graze RM, Calabrese PP, Nuzhdin SV.

BMC Genomics. 2009 Sep 9;10:422. doi: 10.1186/1471-2164-10-422.

2.

Estimates of allele-specific expression in Drosophila with a single genome sequence and RNA-seq data.

Quinn A, Juneja P, Jiggins FM.

Bioinformatics. 2014 Sep 15;30(18):2603-10. doi: 10.1093/bioinformatics/btu342. Epub 2014 May 19.

PMID:
24845654
3.

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.

Degner JF, Marioni JC, Pai AA, Pickrell JK, Nkadori E, Gilad Y, Pritchard JK.

Bioinformatics. 2009 Dec 15;25(24):3207-12. doi: 10.1093/bioinformatics/btp579. Epub 2009 Oct 6.

4.

Genome-Wide Identification and Quantification of cis- and trans-Regulated Genes Responding to Marek's Disease Virus Infection via Analysis of Allele-Specific Expression.

Maceachern S, Muir WM, Crosby SD, Cheng HH.

Front Genet. 2012 Jan 13;2:113. doi: 10.3389/fgene.2011.00113. eCollection 2011.

5.

Genome-wide analysis of cis-regulatory divergence between species in the Arabidopsis genus.

He F, Zhang X, Hu J, Turck F, Dong X, Goebel U, Borevitz J, de Meaux J.

Mol Biol Evol. 2012 Nov;29(11):3385-95. doi: 10.1093/molbev/mss146. Epub 2012 May 28.

6.

Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme.

Kiekens R, Vercauteren A, Moerkerke B, Goetghebeur E, Van Den Daele H, Sterken R, Kuiper M, van Eeuwijk F, Vuylsteke M.

Nucleic Acids Res. 2006 Aug 2;34(13):3677-86. Print 2006. Erratum in: Nucleic Acids Res. 2007;35(3):1038.

7.

Next-generation DNA sequencing-based assay for measuring allelic expression imbalance (AEI) of candidate neuropsychiatric disorder genes in human brain.

Xu X, Wang H, Zhu M, Sun Y, Tao Y, He Q, Wang J, Chen L, Saffen D.

BMC Genomics. 2011 Oct 20;12:518. doi: 10.1186/1471-2164-12-518.

8.

Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing.

Heap GA, Yang JH, Downes K, Healy BC, Hunt KA, Bockett N, Franke L, Dubois PC, Mein CA, Dobson RJ, Albert TJ, Rodesch MJ, Clayton DG, Todd JA, van Heel DA, Plagnol V.

Hum Mol Genet. 2010 Jan 1;19(1):122-34. doi: 10.1093/hmg/ddp473. Epub .

9.

Detecting imbalanced expression of SNP alleles by minisequencing on microarrays.

Liljedahl U, Fredriksson M, Dahlgren A, Syvänen AC.

BMC Biotechnol. 2004 Oct 22;4:24.

10.
11.

SNP-based large-scale identification of allele-specific gene expression in human B cells.

Song MY, Kim HE, Kim S, Choi IH, Lee JK.

Gene. 2012 Feb 10;493(2):211-8. doi: 10.1016/j.gene.2011.11.058. Epub 2011 Dec 8.

PMID:
22178530
12.

Allele-specific expression and eQTL analysis in mouse adipose tissue.

Hasin-Brumshtein Y, Hormozdiari F, Martin L, van Nas A, Eskin E, Lusis AJ, Drake TA.

BMC Genomics. 2014 Jun 13;15:471. doi: 10.1186/1471-2164-15-471.

13.

Evolutionary changes in cis and trans gene regulation.

Wittkopp PJ, Haerum BK, Clark AG.

Nature. 2004 Jul 1;430(6995):85-8.

PMID:
15229602
14.

Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing.

Fontanillas P, Landry CR, Wittkopp PJ, Russ C, Gruber JD, Nusbaum C, Hartl DL.

Mol Ecol. 2010 Mar;19 Suppl 1:212-27. doi: 10.1111/j.1365-294X.2010.04472.x.

15.

Inference of allele-specific expression from RNA-seq data.

Korir PK, Seoighe C.

Methods Mol Biol. 2014;1112:49-69. doi: 10.1007/978-1-62703-773-0_4.

PMID:
24478007
16.

Comparing computational methods for identification of allele-specific expression based on next generation sequencing data.

Liu Z, Yang J, Xu H, Li C, Wang Z, Li Y, Dong X, Li Y.

Genet Epidemiol. 2014 Nov;38(7):591-8. doi: 10.1002/gepi.21846. Epub 2014 Sep 2.

PMID:
25183311
17.

Regulatory changes underlying expression differences within and between Drosophila species.

Wittkopp PJ, Haerum BK, Clark AG.

Nat Genet. 2008 Mar;40(3):346-50. doi: 10.1038/ng.77. Epub 2008 Feb 17.

PMID:
18278046
18.

Genome-wide identification of allele-specific effects on gene expression for single and multiple individuals.

Zhang S, Wang F, Wang H, Zhang F, Xu B, Li X, Wang Y.

Gene. 2014 Jan 1;533(1):366-73. doi: 10.1016/j.gene.2013.09.029. Epub 2013 Oct 11.

PMID:
24120619
19.

SNP discovery by high-throughput sequencing in soybean.

Wu X, Ren C, Joshi T, Vuong T, Xu D, Nguyen HT.

BMC Genomics. 2010 Aug 11;11:469. doi: 10.1186/1471-2164-11-469.

20.

Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans.

Lawniczak MK, Holloway AK, Begun DJ, Jones CD.

Genome Biol. 2008;9(8):R125. doi: 10.1186/gb-2008-9-8-r125. Epub 2008 Aug 12.

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