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Results: 1 to 20 of 212

Similar articles for PubMed (Select 19442738)

1.

High-throughput bisulfite sequencing in mammalian genomes.

Smith ZD, Gu H, Bock C, Gnirke A, Meissner A.

Methods. 2009 Jul;48(3):226-32. doi: 10.1016/j.ymeth.2009.05.003. Epub 2009 May 12.

2.

High-Throughput Sequencing Technologies.

Reuter JA, Spacek DV, Snyder MP.

Mol Cell. 2015 May 21;58(4):586-597. doi: 10.1016/j.molcel.2015.05.004. Review.

PMID:
26000844
3.

Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing.

Guo H, Zhu P, Guo F, Li X, Wu X, Fan X, Wen L, Tang F.

Nat Protoc. 2015 May;10(5):645-59. doi: 10.1038/nprot.2015.039. Epub 2015 Apr 2.

PMID:
25837417
4.

Tilling by sequencing.

Tsai H, Ngo K, Lieberman M, Missirian V, Comai L.

Methods Mol Biol. 2015;1284:359-80. doi: 10.1007/978-1-4939-2444-8_18.

PMID:
25757782
5.

Whole-genome DNA methylation profiling with nucleotide resolution.

Hsieh TF.

Methods Mol Biol. 2015;1284:27-40. doi: 10.1007/978-1-4939-2444-8_2.

PMID:
25757766
6.

Enhanced reduced representation bisulfite sequencing for assessment of DNA methylation at base pair resolution.

Garrett-Bakelman FE, Sheridan CK, Kacmarczyk TJ, Ishii J, Betel D, Alonso A, Mason CE, Figueroa ME, Melnick AM.

J Vis Exp. 2015 Feb 24;(96):e52246. doi: 10.3791/52246.

7.

Targeted DNA methylation analysis by next-generation sequencing.

Masser DR, Stanford DR, Freeman WM.

J Vis Exp. 2015 Feb 24;(96). doi: 10.3791/52488.

8.

The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells.

Wippermann A, Rupp O, Brinkrolf K, Hoffrogge R, Noll T.

J Biotechnol. 2015 Apr 10;199:38-46. doi: 10.1016/j.jbiotec.2015.02.014. Epub 2015 Feb 19.

9.

MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing.

Urich MA, Nery JR, Lister R, Schmitz RJ, Ecker JR.

Nat Protoc. 2015 Mar;10(3):475-83. doi: 10.1038/nprot.2014.114. Epub 2015 Feb 18.

PMID:
25692984
10.

Improved tagmentation-based whole-genome bisulfite sequencing for input DNA from less than 100 mammalian cells.

Lu H, Yuan Z, Tan T, Wang J, Zhang J, Luo HJ, Xia Y, Ji W, Gao F.

Epigenomics. 2015 Feb;7(1):47-56. doi: 10.2217/epi.14.76.

PMID:
25687465
11.

A cautionary note on using binary calls for analysis of DNA methylation.

Prochenka A, Pokarowski P, Gasperowicz P, Kosińska J, Stawiński P, Zbieć-Piekarska R, Spólnicka M, Branicki W, Płoski R.

Bioinformatics. 2015 May 1;31(9):1519-20. doi: 10.1093/bioinformatics/btv090. Epub 2015 Feb 13. No abstract available.

PMID:
25682069
12.

Genome-wide DNA methylation analysis: no evidence for stable hemimethylation in the sheep muscle genome.

Couldrey C, Brauning R, Henderson HV, McEwan JC.

Anim Genet. 2015 Apr;46(2):185-9. doi: 10.1111/age.12268. Epub 2015 Feb 6.

PMID:
25662407
14.

AKSmooth: enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.

Chen J, Lutsik P, Akulenko R, Walter J, Helms V.

J Bioinform Comput Biol. 2014 Dec;12(6):1442005. doi: 10.1142/S0219720014420050.

PMID:
25553811
15.

Genome-wide analysis of DNA methylation dynamics during early human development.

Okae H, Chiba H, Hiura H, Hamada H, Sato A, Utsunomiya T, Kikuchi H, Yoshida H, Tanaka A, Suyama M, Arima T.

PLoS Genet. 2014 Dec 11;10(12):e1004868. doi: 10.1371/journal.pgen.1004868. eCollection 2014 Dec.

16.

Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation.

Li D, Zhang B, Xing X, Wang T.

Methods. 2015 Jan 15;72:29-40. doi: 10.1016/j.ymeth.2014.10.032. Epub 2014 Nov 6.

PMID:
25448294
17.

Understanding the complexity of antigen retrieval of DNA methylation for immunofluorescence-based measurement and an approach to challenge.

Çelik S.

J Immunol Methods. 2015 Jan;416:1-16. doi: 10.1016/j.jim.2014.11.011. Epub 2014 Nov 28. Review.

PMID:
25435341
18.

Whole genome sequencing and methylome analysis of the wild guinea pig.

Weyrich A, Schüllermann T, Heeger F, Jeschek M, Mazzoni CJ, Chen W, Schumann K, Fickel J.

BMC Genomics. 2014 Nov 28;15:1036. doi: 10.1186/1471-2164-15-1036.

19.

Global DNA methylation profiling technologies and the ovarian cancer methylome.

Tang J, Fang F, Miller DF, Pilrose JM, Matei D, Huang TH, Nephew KP.

Methods Mol Biol. 2015;1238:653-75. doi: 10.1007/978-1-4939-1804-1_34.

PMID:
25421685
20.

Sequencing the cancer methylome.

Shull AY, Noonepalle SK, Lee EJ, Choi JH, Shi H.

Methods Mol Biol. 2015;1238:627-51. doi: 10.1007/978-1-4939-1804-1_33.

PMID:
25421684
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