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Results: 1 to 20 of 129

1.

The role of entropy and polarity in intermolecular contacts in protein crystals.

CieĊ›lik M, Derewenda ZS.

Acta Crystallogr D Biol Crystallogr. 2009 May;65(Pt 5):500-9. doi: 10.1107/S0907444909009500. Epub 2009 Apr 18.

PMID:
19390155
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Salvage or recovery of failed targets by mutagenesis to reduce surface entropy.

Goldschmidt L, Eisenberg D, Derewenda ZS.

Methods Mol Biol. 2014;1140:201-9. doi: 10.1007/978-1-4939-0354-2_16.

PMID:
24590720
[PubMed - indexed for MEDLINE]
3.

Extent and nature of contacts between protein molecules in crystal lattices and between subunits of protein oligomers.

Dasgupta S, Iyer GH, Bryant SH, Lawrence CE, Bell JA.

Proteins. 1997 Aug;28(4):494-514.

PMID:
9261866
[PubMed - indexed for MEDLINE]
4.

Hydrophobic, hydrophilic, and charged amino acid networks within protein.

Aftabuddin M, Kundu S.

Biophys J. 2007 Jul 1;93(1):225-31. Epub 2006 Dec 15. Erratum in: Biophys J. 2008 Jun;94(11):5081.

PMID:
17172302
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Protein-protein crystal-packing contacts.

Carugo O, Argos P.

Protein Sci. 1997 Oct;6(10):2261-3. Review.

PMID:
9336849
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Protein-protein interaction at crystal contacts.

Janin J, Rodier F.

Proteins. 1995 Dec;23(4):580-7.

PMID:
8749854
[PubMed - indexed for MEDLINE]
7.

Simulations of reversible protein aggregate and crystal structure.

Patro SY, Przybycien TM.

Biophys J. 1996 Jun;70(6):2888-902.

PMID:
8744327
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Entropy and surface engineering in protein crystallization.

Derewenda ZS, Vekilov PG.

Acta Crystallogr D Biol Crystallogr. 2006 Jan;62(Pt 1):116-24. Epub 2005 Dec 14. Review.

PMID:
16369101
[PubMed - indexed for MEDLINE]
9.

Role of long- and short-range hydrophobic, hydrophilic and charged residues contact network in protein's structural organization.

Sengupta D, Kundu S.

BMC Bioinformatics. 2012 Jun 21;13:142. doi: 10.1186/1471-2105-13-142.

PMID:
22720789
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Toward rational protein crystallization: A Web server for the design of crystallizable protein variants.

Goldschmidt L, Cooper DR, Derewenda ZS, Eisenberg D.

Protein Sci. 2007 Aug;16(8):1569-76.

PMID:
17656576
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Structural features of protein-nucleic acid recognition sites.

Nadassy K, Wodak SJ, Janin J.

Biochemistry. 1999 Feb 16;38(7):1999-2017.

PMID:
10026283
[PubMed - indexed for MEDLINE]
12.

Simulations of kinetically irreversible protein aggregate structure.

Patro SY, Przybycien TM.

Biophys J. 1994 May;66(5):1274-89.

PMID:
8061184
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Protein-RNA contacts at crystal packing surfaces.

Phipps KR, Li H.

Proteins. 2007 Apr 1;67(1):121-7.

PMID:
17211891
[PubMed - indexed for MEDLINE]
14.
15.

Variability of conformations at crystal contacts in BPTI represent true low-energy structures: correspondence among lattice packing and molecular dynamics structures.

Kossiakoff AA, Randal M, Guenot J, Eigenbrot C.

Proteins. 1992 Sep;14(1):65-74.

PMID:
1384033
[PubMed - indexed for MEDLINE]
16.

Distinct molecular surfaces and hydrophobicity of amino acid residues in proteins.

Pacios LF.

J Chem Inf Comput Sci. 2001 Sep-Oct;41(5):1427-35.

PMID:
11604044
[PubMed - indexed for MEDLINE]
17.

Protein contacts, inter-residue interactions and side-chain modelling.

Faure G, Bornot A, de Brevern AG.

Biochimie. 2008 Apr;90(4):626-39. Epub 2007 Nov 28. Erratum in: Biochimie. 2008 Aug;90(8):1264.

PMID:
18086572
[PubMed - indexed for MEDLINE]
18.

The jigsaw puzzle model: search for conformational specificity in protein interiors.

Banerjee R, Sen M, Bhattacharya D, Saha P.

J Mol Biol. 2003 Oct 10;333(1):211-26.

PMID:
14516754
[PubMed - indexed for MEDLINE]
19.

Interresidue contacts in proteins and protein-protein interfaces and their use in characterizing the homodimeric interface.

Saha RP, Bahadur RP, Chakrabarti P.

J Proteome Res. 2005 Sep-Oct;4(5):1600-9.

PMID:
16212412
[PubMed - indexed for MEDLINE]
20.

Interior and surface of monomeric proteins.

Miller S, Janin J, Lesk AM, Chothia C.

J Mol Biol. 1987 Aug 5;196(3):641-56.

PMID:
3681970
[PubMed - indexed for MEDLINE]

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