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Results: 1 to 20 of 114

Similar articles for PubMed (Select 19252504)

1.

Quantification of rare allelic variants from pooled genomic DNA.

Druley TE, Vallania FL, Wegner DJ, Varley KE, Knowles OL, Bonds JA, Robison SW, Doniger SW, Hamvas A, Cole FS, Fay JC, Mitra RD.

Nat Methods. 2009 Apr;6(4):263-5. doi: 10.1038/nmeth.1307. Epub 2009 Mar 1.

2.

Genome resequencing and genetic variation.

Stratton M.

Nat Biotechnol. 2008 Jan;26(1):65-6. doi: 10.1038/nbt0108-65. Review. No abstract available.

PMID:
18183021
3.

Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing.

Ramos E, Levinson BT, Chasnoff S, Hughes A, Young AL, Thornton K, Li A, Vallania FL, Province M, Druley TE.

BMC Genomics. 2012 Dec 6;13:683. doi: 10.1186/1471-2164-13-683.

4.

Validation of single nucleotide polymorphism quantification in pooled DNA samples with SNaPIT. A glycosylase-mediated methods for polymorphism detection method.

Curran S, Hill L, O'Grady G, Turic D, Asherson P, Taylor E, Sham P, Craig I, Vaughan P.

Mol Biotechnol. 2002 Nov;22(3):253-62.

PMID:
12448880
5.

Detection of rare genomic variants from pooled sequencing using SPLINTER.

Vallania F, Ramos E, Cresci S, Mitra RD, Druley TE.

J Vis Exp. 2012 Jun 23;(64). pii: 3943. doi: 10.3791/3943.

6.

Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis.

Niranjan TS, Adamczyk A, Bravo HC, Taub MA, Wheelan SJ, Irizarry R, Wang T.

Genome Biol. 2011 Sep 28;12(9):R93. doi: 10.1186/gb-2011-12-9-r93.

7.
8.

Automated identification of single nucleotide polymorphisms from sequencing data.

Takahashi M, Matsuda F, Margetic N, Lathrop M.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:87-93.

PMID:
15838126
9.

Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling.

Marroni F, Pinosio S, Di Centa E, Jurman I, Boerjan W, Felice N, Cattonaro F, Morgante M.

Plant J. 2011 Aug;67(4):736-45. doi: 10.1111/j.1365-313X.2011.04627.x. Epub 2011 Jul 11. Erratum in: Plant J. 2012 Feb;69(3):564.

PMID:
21554453
10.

MPDA: microarray pooled DNA analyzer.

Yang HC, Huang MC, Li LH, Lin CH, Yu AL, Diccianni MB, Wu JY, Chen YT, Fann CS.

BMC Bioinformatics. 2008 Apr 15;9:196. doi: 10.1186/1471-2105-9-196.

11.

LdCompare: rapid computation of single- and multiple-marker r2 and genetic coverage.

Hao K, Di X, Cawley S.

Bioinformatics. 2007 Jan 15;23(2):252-4. Epub 2006 Dec 5.

12.

SNPNB: analyzing neighboring-nucleotide biases on single nucleotide polymorphisms (SNPs).

Zhang F, Zhao Z.

Bioinformatics. 2005 May 15;21(10):2517-9. Epub 2005 Mar 15.

13.

SNP discovery using advanced algorithms and neural networks.

Unneberg P, Strömberg M, Sterky F.

Bioinformatics. 2005 May 15;21(10):2528-30. Epub 2005 Mar 3.

14.

Extending assembly of short DNA sequences to handle error.

Jeck WR, Reinhardt JA, Baltrus DA, Hickenbotham MT, Magrini V, Mardis ER, Dangl JL, Jones CD.

Bioinformatics. 2007 Nov 1;23(21):2942-4. Epub 2007 Sep 24.

15.

Next generation sequencing has lower sequence coverage and poorer SNP-detection capability in the regulatory regions.

Wang W, Wei Z, Lam TW, Wang J.

Sci Rep. 2011;1:55. doi: 10.1038/srep00055. Epub 2011 Aug 5.

16.

SNP discovery in pooled samples with mismatch repair detection.

Fakhrai-Rad H, Zheng J, Willis TD, Wong K, Suyenaga K, Moorhead M, Eberle J, Thorstenson YR, Jones T, Davis RW, Namsaraev E, Faham M.

Genome Res. 2004 Jul;14(7):1404-12.

17.

Strainer: software for analysis of population variation in community genomic datasets.

Eppley JM, Tyson GW, Getz WM, Banfield JF.

BMC Bioinformatics. 2007 Oct 17;8:398.

18.

Efficient and cost effective population resequencing by pooling and in-solution hybridization.

Bansal V, Tewhey R, Leproust EM, Schork NJ.

PLoS One. 2011 Mar 30;6(3):e18353. doi: 10.1371/journal.pone.0018353.

19.

Genome assembly and haplotyping with Hi-C.

Korbel JO, Lee C.

Nat Biotechnol. 2013 Dec;31(12):1099-101. doi: 10.1038/nbt.2764. No abstract available.

PMID:
24316648
20.

PoooL: an efficient method for estimating haplotype frequencies from large DNA pools.

Zhang H, Yang HC, Yang Y.

Bioinformatics. 2008 Sep 1;24(17):1942-8. doi: 10.1093/bioinformatics/btn324. Epub 2008 Jun 23.

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