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Results: 1 to 20 of 80

1.

MSB: a mean-shift-based approach for the analysis of structural variation in the genome.

Wang LY, Abyzov A, Korbel JO, Snyder M, Gerstein M.

Genome Res. 2009 Jan;19(1):106-17. doi: 10.1101/gr.080069.108. Epub 2008 Nov 26.

PMID:
19037015
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion.

Xi R, Hadjipanayis AG, Luquette LJ, Kim TM, Lee E, Zhang J, Johnson MD, Muzny DM, Wheeler DA, Gibbs RA, Kucherlapati R, Park PJ.

Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):E1128-36. doi: 10.1073/pnas.1110574108. Epub 2011 Nov 7.

PMID:
22065754
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Sensitive and accurate detection of copy number variants using read depth of coverage.

Yoon S, Xuan Z, Makarov V, Ye K, Sebat J.

Genome Res. 2009 Sep;19(9):1586-92. doi: 10.1101/gr.092981.109. Epub 2009 Aug 5.

PMID:
19657104
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Microarray-based comparative genomic hybridization (array-CGH) as a useful tool for identifying genes involved in Glioblastoma (GB).

Ruano Y, Mollejo M, de Lope AR, Hernández-Moneo JL, Martínez P, Meléndez B.

Methods Mol Biol. 2010;653:35-45. doi: 10.1007/978-1-60761-759-4_3. Review.

PMID:
20721736
[PubMed - indexed for MEDLINE]
5.

SW-ARRAY: a dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data.

Price TS, Regan R, Mott R, Hedman A, Honey B, Daniels RJ, Smith L, Greenfield A, Tiganescu A, Buckle V, Ventress N, Ayyub H, Salhan A, Pedraza-Diaz S, Broxholme J, Ragoussis J, Higgs DR, Flint J, Knight SJ.

Nucleic Acids Res. 2005 Jun 16;33(11):3455-64. Print 2005.

PMID:
15961730
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A genome-wide analysis of array-based comparative genomic hybridization (CGH) data to detect intra-species variations and evolutionary relationships.

Mitra A, Liu G, Song J.

PLoS One. 2009 Nov 24;4(11):e7978. doi: 10.1371/journal.pone.0007978.

PMID:
19956659
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Profiling of copy number variations (CNVs) in healthy individuals from three ethnic groups using a human genome 32 K BAC-clone-based array.

Díaz de Ståhl T, Sandgren J, Piotrowski A, Nord H, Andersson R, Menzel U, Bogdan A, Thuresson AC, Poplawski A, von Tell D, Hansson CM, Elshafie AI, Elghazali G, Imreh S, Nordenskjöld M, Upadhyaya M, Komorowski J, Bruder CE, Dumanski JP.

Hum Mutat. 2008 Mar;29(3):398-408.

PMID:
18058796
[PubMed - indexed for MEDLINE]
8.

Identification of oligodendroglioma specific chromosomal copy number changes in the glioblastoma MI-4 cell line by array-CGH and FISH analyses.

Magnani I, Moroni RF, Roversi G, Beghini A, Pfundt R, Schoenmakers EF, Larizza L.

Cancer Genet Cytogenet. 2005 Sep;161(2):140-5. Erratum in: Cancer Genet Cytogenet. 2005 Nov;163(1):99. Ramona, Ramona Frida [corrected to Moroni, Ramona Frida].

PMID:
16102584
[PubMed - indexed for MEDLINE]
9.

Array CGH data modeling and smoothing in Stationary Wavelet Packet Transform domain.

Huang H, Nguyen N, Oraintara S, Vo A.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S17. doi: 10.1186/1471-2164-9-S2-S17.

PMID:
18831782
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Robust smooth segmentation approach for array CGH data analysis.

Huang J, Gusnanto A, O'Sullivan K, Staaf J, Borg A, Pawitan Y.

Bioinformatics. 2007 Sep 15;23(18):2463-9. Epub 2007 Jul 27.

PMID:
17660206
[PubMed - indexed for MEDLINE]
Free Article
11.

Detecting copy number variations from array CGH data based on a conditional random field model.

Yin XL, Li J.

J Bioinform Comput Biol. 2010 Apr;8(2):295-314.

PMID:
20401947
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Supervised classification of array CGH data with HMM-based feature selection.

Daemen A, Gevaert O, Leunen K, Legius E, Vergote I, De Moor B.

Pac Symp Biocomput. 2009:468-79.

PMID:
19209723
[PubMed - indexed for MEDLINE]
Free Article
13.

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Pinkel D, Segraves R, Sudar D, Clark S, Poole I, Kowbel D, Collins C, Kuo WL, Chen C, Zhai Y, Dairkee SH, Ljung BM, Gray JW, Albertson DG.

Nat Genet. 1998 Oct;20(2):207-11.

PMID:
9771718
[PubMed - indexed for MEDLINE]
14.

CNV-seq, a new method to detect copy number variation using high-throughput sequencing.

Xie C, Tammi MT.

BMC Bioinformatics. 2009 Mar 6;10:80. doi: 10.1186/1471-2105-10-80.

PMID:
19267900
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome.

Zhang J, Feuk L, Duggan GE, Khaja R, Scherer SW.

Cytogenet Genome Res. 2006;115(3-4):205-14. Review.

PMID:
17124402
[PubMed - indexed for MEDLINE]
16.

Spatial smoothing and hot spot detection for CGH data using the fused lasso.

Tibshirani R, Wang P.

Biostatistics. 2008 Jan;9(1):18-29. Epub 2007 May 18.

PMID:
17513312
[PubMed - indexed for MEDLINE]
Free Article
17.

An oligonucleotide based array-CGH system for detection of genome wide copy number changes including subtelomeric regions for genetic evaluation of mental retardation.

Toruner GA, Streck DL, Schwalb MN, Dermody JJ.

Am J Med Genet A. 2007 Apr 15;143A(8):824-9.

PMID:
17366576
[PubMed - indexed for MEDLINE]
18.

Accurate detection of aneuploidies in array CGH and gene expression microarray data.

Myers CL, Dunham MJ, Kung SY, Troyanskaya OG.

Bioinformatics. 2004 Dec 12;20(18):3533-43. Epub 2004 Jul 29.

PMID:
15284100
[PubMed - indexed for MEDLINE]
Free Article
19.

Reference-unbiased copy number variant analysis using CGH microarrays.

Ju YS, Hong D, Kim S, Park SS, Kim S, Lee S, Park H, Kim JI, Seo JS.

Nucleic Acids Res. 2010 Nov;38(20):e190. doi: 10.1093/nar/gkq730. Epub 2010 Aug 27.

PMID:
20802225
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome-wide analysis of DNA copy-number changes using cDNA microarrays.

Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO.

Nat Genet. 1999 Sep;23(1):41-6.

PMID:
10471496
[PubMed - indexed for MEDLINE]

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