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Results: 1 to 20 of 101

1.

Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines.

Castle JC, Zhang C, Shah JK, Kulkarni AV, Kalsotra A, Cooper TA, Johnson JM.

Nat Genet. 2008 Dec;40(12):1416-25. doi: 10.1038/ng.264. Epub 2008 Nov 2.

PMID:
18978788
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing.

Das D, Clark TA, Schweitzer A, Yamamoto M, Marr H, Arribere J, Minovitsky S, Poliakov A, Dubchak I, Blume JE, Conboy JG.

Nucleic Acids Res. 2007;35(14):4845-57. Epub 2007 Jul 10.

PMID:
17626050
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Discovery of tissue-specific exons using comprehensive human exon microarrays.

Clark TA, Schweitzer AC, Chen TX, Staples MK, Lu G, Wang H, Williams A, Blume JE.

Genome Biol. 2007;8(4):R64.

PMID:
17456239
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Unusual intron conservation near tissue-regulated exons found by splicing microarrays.

Sugnet CW, Srinivasan K, Clark TA, O'Brien G, Cline MS, Wang H, Williams A, Kulp D, Blume JE, Haussler D, Ares M Jr.

PLoS Comput Biol. 2006 Jan;2(1):e4. Epub 2006 Jan 20.

PMID:
16424921
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing.

Wang X, Wang K, Radovich M, Wang Y, Wang G, Feng W, Sanford JR, Liu Y.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S4. doi: 10.1186/1471-2164-10-S1-S4.

PMID:
19594881
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing.

Ladd AN, Charlet N, Cooper TA.

Mol Cell Biol. 2001 Feb;21(4):1285-96.

PMID:
11158314
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing.

Brudno M, Gelfand MS, Spengler S, Zorn M, Dubchak I, Conboy JG.

Nucleic Acids Res. 2001 Jun 1;29(11):2338-48.

PMID:
11376152
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Alternative splicing of the neurofibromatosis type 1 pre-mRNA is regulated by the muscleblind-like proteins and the CUG-BP and ELAV-like factors.

Fleming VA, Geng C, Ladd AN, Lou H.

BMC Mol Biol. 2012 Dec 10;13:35. doi: 10.1186/1471-2199-13-35.

PMID:
23227900
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities.

Nakahata S, Kawamoto S.

Nucleic Acids Res. 2005 Apr 11;33(7):2078-89. Print 2005.

PMID:
15824060
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR).

Solomon O, Oren S, Safran M, Deshet-Unger N, Akiva P, Jacob-Hirsch J, Cesarkas K, Kabesa R, Amariglio N, Unger R, Rechavi G, Eyal E.

RNA. 2013 May;19(5):591-604. doi: 10.1261/rna.038042.112. Epub 2013 Mar 8.

PMID:
23474544
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons.

Minovitsky S, Gee SL, Schokrpur S, Dubchak I, Conboy JG.

Nucleic Acids Res. 2005 Feb 3;33(2):714-24. Print 2005.

PMID:
15691898
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A molecular code for splicing silencing: configurations of guanosine-rich motifs.

Grabowski PJ.

Biochem Soc Trans. 2004 Dec;32(Pt 6):924-7.

PMID:
15506926
[PubMed - indexed for MEDLINE]
13.

CELF family RNA-binding protein UNC-75 regulates two sets of mutually exclusive exons of the unc-32 gene in neuron-specific manners in Caenorhabditis elegans.

Kuroyanagi H, Watanabe Y, Hagiwara M.

PLoS Genet. 2013;9(2):e1003337. doi: 10.1371/journal.pgen.1003337. Epub 2013 Feb 28.

PMID:
23468662
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Variation in alternative splicing across human tissues.

Yeo G, Holste D, Kreiman G, Burge CB.

Genome Biol. 2004;5(10):R74. Epub 2004 Sep 13.

PMID:
15461793
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB.

Llorian M, Schwartz S, Clark TA, Hollander D, Tan LY, Spellman R, Gordon A, Schweitzer AC, de la Grange P, Ast G, Smith CW.

Nat Struct Mol Biol. 2010 Sep;17(9):1114-23. doi: 10.1038/nsmb.1881. Epub 2010 Aug 15.

PMID:
20711188
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons.

Boutz PL, Stoilov P, Li Q, Lin CH, Chawla G, Ostrow K, Shiue L, Ares M Jr, Black DL.

Genes Dev. 2007 Jul 1;21(13):1636-52.

PMID:
17606642
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Position-dependent and neuron-specific splicing regulation by the CELF family RNA-binding protein UNC-75 in Caenorhabditis elegans.

Kuroyanagi H, Watanabe Y, Suzuki Y, Hagiwara M.

Nucleic Acids Res. 2013 Apr;41(7):4015-25. doi: 10.1093/nar/gkt097. Epub 2013 Feb 14.

PMID:
23416545
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The Muscleblind family of proteins: an emerging class of regulators of developmentally programmed alternative splicing.

Pascual M, Vicente M, Monferrer L, Artero R.

Differentiation. 2006 Mar;74(2-3):65-80. Review.

PMID:
16533306
[PubMed - indexed for MEDLINE]
19.

Functional coordination of alternative splicing in the mammalian central nervous system.

Fagnani M, Barash Y, Ip JY, Misquitta C, Pan Q, Saltzman AL, Shai O, Lee L, Rozenhek A, Mohammad N, Willaime-Morawek S, Babak T, Zhang W, Hughes TR, van der Kooy D, Frey BJ, Blencowe BJ.

Genome Biol. 2007;8(6):R108.

PMID:
17565696
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Alternative pre-mRNA splicing switches modulate gene expression in late erythropoiesis.

Yamamoto ML, Clark TA, Gee SL, Kang JA, Schweitzer AC, Wickrema A, Conboy JG.

Blood. 2009 Apr 2;113(14):3363-70. doi: 10.1182/blood-2008-05-160325. Epub 2009 Feb 4.

PMID:
19196664
[PubMed - indexed for MEDLINE]
Free PMC Article

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