Format
Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 1 to 20 of 116

1.

HITS-CLIP yields genome-wide insights into brain alternative RNA processing.

Licatalosi DD, Mele A, Fak JJ, Ule J, Kayikci M, Chi SW, Clark TA, Schweitzer AC, Blume JE, Wang X, Darnell JC, Darnell RB.

Nature. 2008 Nov 27;456(7221):464-9. doi: 10.1038/nature07488. Epub 2008 Nov 2.

2.

CLIP identifies Nova-regulated RNA networks in the brain.

Ule J, Jensen KB, Ruggiu M, Mele A, Ule A, Darnell RB.

Science. 2003 Nov 14;302(5648):1212-5.

3.

NOVA-dependent regulation of cryptic NMD exons controls synaptic protein levels after seizure.

Eom T, Zhang C, Wang H, Lay K, Fak J, Noebels JL, Darnell RB.

Elife. 2013 Jan 22;2:e00178. doi: 10.7554/eLife.00178.

4.

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.

Chi SW, Zang JB, Mele A, Darnell RB.

Nature. 2009 Jul 23;460(7254):479-86. doi: 10.1038/nature08170. Epub 2009 Jun 17.

5.

Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data.

Zhang C, Darnell RB.

Nat Biotechnol. 2011 Jun 1;29(7):607-14. doi: 10.1038/nbt.1873.

6.

The neuronal splicing factor Nova controls alternative splicing in N-type and P-type CaV2 calcium channels.

Allen SE, Darnell RB, Lipscombe D.

Channels (Austin). 2010 Nov-Dec;4(6):483-9. Epub 2010 Nov 1. Review.

7.

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T.

J Vis Exp. 2010 Jul 2;(41). pii: 2034. doi: 10.3791/2034.

8.

Nova autoregulation reveals dual functions in neuronal splicing.

Dredge BK, Stefani G, Engelhard CC, Darnell RB.

EMBO J. 2005 Apr 20;24(8):1608-20. Epub 2005 Mar 31.

9.

Regulatory roles of heterogeneous nuclear ribonucleoprotein M and Nova-1 protein in alternative splicing of dopamine D2 receptor pre-mRNA.

Park E, Iaccarino C, Lee J, Kwon I, Baik SM, Kim M, Seong JY, Son GH, Borrelli E, Kim K.

J Biol Chem. 2011 Jul 15;286(28):25301-8. doi: 10.1074/jbc.M110.206540. Epub 2011 May 26.

10.

Loss of MBNL leads to disruption of developmentally regulated alternative polyadenylation in RNA-mediated disease.

Batra R, Charizanis K, Manchanda M, Mohan A, Li M, Finn DJ, Goodwin M, Zhang C, Sobczak K, Thornton CA, Swanson MS.

Mol Cell. 2014 Oct 23;56(2):311-22. doi: 10.1016/j.molcel.2014.08.027. Epub 2014 Sep 25.

11.

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

Konig J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J.

J Vis Exp. 2011 Apr 30;(50). pii: 2638. doi: 10.3791/2638.

12.

Global insights into alternative polyadenylation regulation.

Batra R, Manchanda M, Swanson MS.

RNA Biol. 2015;12(6):597-602. doi: 10.1080/15476286.2015.1040974.

PMID:
25892335
13.

Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls.

Zhang C, Frias MA, Mele A, Ruggiu M, Eom T, Marney CB, Wang H, Licatalosi DD, Fak JJ, Darnell RB.

Science. 2010 Jul 23;329(5990):439-43. doi: 10.1126/science.1191150. Epub 2010 Jun 17.

14.

Prediction of clustered RNA-binding protein motif sites in the mammalian genome.

Zhang C, Lee KY, Swanson MS, Darnell RB.

Nucleic Acids Res. 2013 Aug;41(14):6793-807. doi: 10.1093/nar/gkt421. Epub 2013 May 18.

15.

Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis.

Moore MJ, Zhang C, Gantman EC, Mele A, Darnell JC, Darnell RB.

Nat Protoc. 2014 Feb;9(2):263-93. doi: 10.1038/nprot.2014.012. Epub 2014 Jan 9.

16.

Stepwise assembly of the Nova-regulated alternative splicing network in the vertebrate brain.

Irimia M, Denuc A, Burguera D, Somorjai I, Martín-Durán JM, Genikhovich G, Jimenez-Delgado S, Technau U, Roy SW, Marfany G, Garcia-Fernàndez J.

Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5319-24. doi: 10.1073/pnas.1012333108. Epub 2011 Mar 9.

18.

An RNA map predicting Nova-dependent splicing regulation.

Ule J, Stefani G, Mele A, Ruggiu M, Wang X, Taneri B, Gaasterland T, Blencowe BJ, Darnell RB.

Nature. 2006 Nov 30;444(7119):580-6. Epub 2006 Oct 25.

PMID:
17065982
19.

High-throughput sequencing of RNA isolated by cross-linking and immunoprecipitation (HITS-CLIP) to determine sites of binding of CstF-64 on nascent RNAs.

Grozdanov PN, Macdonald CC.

Methods Mol Biol. 2014;1125:187-208. doi: 10.1007/978-1-62703-971-0_17.

PMID:
24590791
20.

Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.

Tollervey JR, Curk T, Rogelj B, Briese M, Cereda M, Kayikci M, König J, Hortobágyi T, Nishimura AL, Zupunski V, Patani R, Chandran S, Rot G, Zupan B, Shaw CE, Ule J.

Nat Neurosci. 2011 Apr;14(4):452-8. doi: 10.1038/nn.2778. Epub 2011 Feb 27.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk