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Results: 1 to 20 of 120

1.

NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF.

Halavi M, Polavaram S, Donohue DE, Hamilton G, Hoyt J, Smith KP, Ascoli GA.

Neuroinformatics. 2008 Sep;6(3):241-52. doi: 10.1007/s12021-008-9030-1. Epub 2008 Oct 24.

PMID:
18949582
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.

Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR, Larson SD, Rubin D, Shepherd GM, Turner JA, Martone ME.

Neuroinformatics. 2008 Sep;6(3):175-94. doi: 10.1007/s12021-008-9032-z. Epub 2008 Oct 31.

PMID:
18975148
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Terminology for neuroscience data discovery: multi-tree syntax and investigator-derived semantics.

Gardner D, Goldberg DH, Grafstein B, Robert A, Gardner EP.

Neuroinformatics. 2008 Sep;6(3):161-74. doi: 10.1007/s12021-008-9029-7. Epub 2008 Oct 29.

PMID:
18958630
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Issues in the design of a pilot concept-based query interface for the neuroinformatics information framework.

Marenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL.

Neuroinformatics. 2008 Sep;6(3):229-39. doi: 10.1007/s12021-008-9035-9. Epub 2008 Oct 25.

PMID:
18953674
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF).

Gupta A, Bug W, Marenco L, Qian X, Condit C, Rangarajan A, Müller HM, Miller PL, Sanders B, Grethe JS, Astakhov V, Shepherd G, Sternberg PW, Martone ME.

Neuroinformatics. 2008 Sep;6(3):205-17. doi: 10.1007/s12021-008-9033-y. Epub 2008 Oct 29.

PMID:
18958629
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers.

Marenco L, Ascoli GA, Martone ME, Shepherd GM, Miller PL.

Neuroinformatics. 2008 Sep;6(3):219-27. doi: 10.1007/s12021-008-9025-y. Epub 2008 Oct 31.

PMID:
18975149
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Textpresso for neuroscience: searching the full text of thousands of neuroscience research papers.

Müller HM, Rangarajan A, Teal TK, Sternberg PW.

Neuroinformatics. 2008 Sep;6(3):195-204. doi: 10.1007/s12021-008-9031-0. Epub 2008 Oct 24.

PMID:
18949581
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The neuroscience information framework: a data and knowledge environment for neuroscience.

Gardner D, Akil H, Ascoli GA, Bowden DM, Bug W, Donohue DE, Goldberg DH, Grafstein B, Grethe JS, Gupta A, Halavi M, Kennedy DN, Marenco L, Martone ME, Miller PL, Müller HM, Robert A, Shepherd GM, Sternberg PW, Van Essen DC, Williams RW.

Neuroinformatics. 2008 Sep;6(3):149-60. doi: 10.1007/s12021-008-9024-z. Epub 2008 Oct 23.

PMID:
18946742
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.

Bandrowski AE, Cachat J, Li Y, Müller HM, Sternberg PW, Ciccarese P, Clark T, Marenco L, Wang R, Astakhov V, Grethe JS, Martone ME.

Database (Oxford). 2012 Mar 20;2012:bas005. doi: 10.1093/database/bas005. Print 2012.

PMID:
22434839
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The NIF DISCO Framework: facilitating automated integration of neuroscience content on the web.

Marenco L, Wang R, Shepherd GM, Miller PL.

Neuroinformatics. 2010 Jun;8(2):101-12. doi: 10.1007/s12021-010-9068-8.

PMID:
20387131
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A repository based on a dynamically extensible data model supporting multidisciplinary research in neuroscience.

Corradi L, Porro I, Schenone A, Momeni P, Ferrari R, Nobili F, Ferrara M, Arnulfo G, Fato MM.

BMC Med Inform Decis Mak. 2012 Oct 8;12:115. doi: 10.1186/1472-6947-12-115.

PMID:
23043673
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework.

Cachat J, Bandrowski A, Grethe JS, Gupta A, Astakhov V, Imam F, Larson SD, Martone ME.

Int Rev Neurobiol. 2012;103:39-68. doi: 10.1016/B978-0-12-388408-4.00003-4. Review.

PMID:
23195120
[PubMed - indexed for MEDLINE]
13.

Approaches to neuroscience data integration.

Cheung KH, Lim E, Samwald M, Chen H, Marenco L, Holford ME, Morse TM, Mutalik P, Shepherd GM, Miller PL.

Brief Bioinform. 2009 Jul;10(4):345-53. doi: 10.1093/bib/bbp029.

PMID:
19505888
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Online workbenches for neural network connections.

Bota M, Swanson LW.

J Comp Neurol. 2007 Feb 10;500(5):807-14. Review.

PMID:
17177264
[PubMed - indexed for MEDLINE]
15.

Digital reconstructions of neuronal morphology: three decades of research trends.

Halavi M, Hamilton KA, Parekh R, Ascoli GA.

Front Neurosci. 2012 Apr 23;6:49. doi: 10.3389/fnins.2012.00049. eCollection 2012.

PMID:
22536169
[PubMed]
Free PMC Article
16.

Quantitative Investigations of Axonal and Dendritic Arbors: Development, Structure, Function, and Pathology.

Parekh R, Ascoli GA.

Neuroscientist. 2014 Jun 27. pii: 1073858414540216. [Epub ahead of print] Review.

PMID:
24972604
[PubMed - as supplied by publisher]
17.

Discovery and integrative neuroscience.

Koslow SH.

Clin EEG Neurosci. 2005 Apr;36(2):55-63. Review.

PMID:
15999900
[PubMed - indexed for MEDLINE]
18.

NeuroExtract: facilitating neuroscience-oriented retrieval from broadly-focused bioscience databases using text-based query mediation.

Crasto CJ, Masiar P, Miller PL.

J Am Med Inform Assoc. 2007 May-Jun;14(3):355-60. Epub 2007 Feb 28.

PMID:
17329721
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Data sharing for computational neuroscience.

Teeters JL, Harris KD, Millman KJ, Olshausen BA, Sommer FT.

Neuroinformatics. 2008 Spring;6(1):47-55. doi: 10.1007/s12021-008-9009-y. Epub 2008 Feb 8.

PMID:
18259695
[PubMed - indexed for MEDLINE]
20.

AlzPharm: integration of neurodegeneration data using RDF.

Lam HY, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung KH.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S4.

PMID:
17493287
[PubMed - indexed for MEDLINE]
Free PMC Article

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