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Results: 1 to 20 of 625

Related Citations for PubMed (Select 18927605)

1.

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome.

Hon G, Ren B, Wang W.

PLoS Comput Biol. 2008 Oct;4(10):e1000201. doi: 10.1371/journal.pcbi.1000201. Epub 2008 Oct 17.

2.

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B.

Nat Genet. 2007 Mar;39(3):311-8. Epub 2007 Feb 4.

PMID:
17277777
3.

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.

Rye M, Sætrom P, Håndstad T, Drabløs F.

BMC Biol. 2011 Nov 24;9:80. doi: 10.1186/1741-7007-9-80.

4.

Stability of histone modifications across mammalian genomes: implications for 'epigenetic' marking.

Lee BM, Mahadevan LC.

J Cell Biochem. 2009 Sep 1;108(1):22-34. doi: 10.1002/jcb.22250.

PMID:
19623574
5.

Discovery and annotation of functional chromatin signatures in the human genome.

Hon G, Wang W, Ren B.

PLoS Comput Biol. 2009 Nov;5(11):e1000566. doi: 10.1371/journal.pcbi.1000566. Epub 2009 Nov 13.

6.

Prediction of regulatory elements in mammalian genomes using chromatin signatures.

Won KJ, Chepelev I, Ren B, Wang W.

BMC Bioinformatics. 2008 Dec 18;9:547. doi: 10.1186/1471-2105-9-547.

7.

Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.

Chen CY, Morris Q, Mitchell JA.

BMC Genomics. 2012 Apr 26;13:152. doi: 10.1186/1471-2164-13-152.

8.

PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci.

Salmon-Divon M, Dvinge H, Tammoja K, Bertone P.

BMC Bioinformatics. 2010 Aug 6;11:415. doi: 10.1186/1471-2105-11-415.

9.

Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions.

Yaragatti M, Basilico C, Dailey L.

Genome Res. 2008 Jun;18(6):930-8. doi: 10.1101/gr.073460.107. Epub 2008 Apr 25.

10.

Chromatin signature discovery via histone modification profile alignments.

Wang J, Lunyak VV, Jordan IK.

Nucleic Acids Res. 2012 Nov;40(21):10642-56. doi: 10.1093/nar/gks848. Epub 2012 Sep 18.

11.
12.

High-throughput biochemical analysis of in vivo location data reveals novel distinct classes of POU5F1(Oct4)/DNA complexes.

Tantin D, Gemberling M, Callister C, Fairbrother WG.

Genome Res. 2008 Apr;18(4):631-9. doi: 10.1101/gr.072942.107. Epub 2008 Jan 22. Erratum in: Genome Res. 2009 Apr;19(4):690. Fairbrother, William [corrected to Fairbrother, William G].

13.

Targeted recruitment of histone modifications in humans predicted by genomic sequences.

Yuan GC.

J Comput Biol. 2009 Feb;16(2):341-55. doi: 10.1089/cmb.2008.18TT.

PMID:
19193151
14.

Myc-binding-site recognition in the human genome is determined by chromatin context.

Guccione E, Martinato F, Finocchiaro G, Luzi L, Tizzoni L, Dall' Olio V, Zardo G, Nervi C, Bernard L, Amati B.

Nat Cell Biol. 2006 Jul;8(7):764-70. Epub 2006 Jun 11.

PMID:
16767079
15.

Genome-wide prediction of transcription factor binding sites using an integrated model.

Won KJ, Ren B, Wang W.

Genome Biol. 2010 Jan 22;11(1):R7. doi: 10.1186/gb-2010-11-1-r7.

16.

High-resolution profiling of histone methylations in the human genome.

Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K.

Cell. 2007 May 18;129(4):823-37.

17.

An integrated approach to identifying cis-regulatory modules in the human genome.

Won KJ, Agarwal S, Shen L, Shoemaker R, Ren B, Wang W.

PLoS One. 2009;4(5):e5501. doi: 10.1371/journal.pone.0005501. Epub 2009 May 12.

18.

High-definition mapping of retroviral integration sites identifies active regulatory elements in human multipotent hematopoietic progenitors.

Cattoglio C, Pellin D, Rizzi E, Maruggi G, Corti G, Miselli F, Sartori D, Guffanti A, Di Serio C, Ambrosi A, De Bellis G, Mavilio F.

Blood. 2010 Dec 16;116(25):5507-17. doi: 10.1182/blood-2010-05-283523. Epub 2010 Sep 23.

19.

Genome-wide epigenetic analysis of human pluripotent stem cells by ChIP and ChIP-Seq.

Hitchler MJ, Rice JC.

Methods Mol Biol. 2011;767:253-67. doi: 10.1007/978-1-61779-201-4_19.

PMID:
21822881
20.

Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns.

Roh TY, Wei G, Farrell CM, Zhao K.

Genome Res. 2007 Jan;17(1):74-81. Epub 2006 Nov 29.

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