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Similar articles for PubMed (Select 18799807)

1.

Challenges and rewards of interaction proteomics.

Wodak SJ, Pu S, Vlasblom J, Séraphin B.

Mol Cell Proteomics. 2009 Jan;8(1):3-18. doi: 10.1074/mcp.R800014-MCP200. Epub 2008 Sep 17. Review.

2.

Analyzing yeast protein-protein interaction data obtained from different sources.

Bader GD, Hogue CW.

Nat Biotechnol. 2002 Oct;20(10):991-7.

PMID:
12355115
3.

Subunit architecture of multimeric complexes isolated directly from cells.

Hernández H, Dziembowski A, Taverner T, Séraphin B, Robinson CV.

EMBO Rep. 2006 Jun;7(6):605-10. Epub 2006 May 19.

4.

Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size.

Zhang J, Maslov S, Shakhnovich EI.

Mol Syst Biol. 2008;4:210. doi: 10.1038/msb.2008.48. Epub 2008 Aug 5.

5.
6.

Characterization and prediction of protein-protein interactions within and between complexes.

Sprinzak E, Altuvia Y, Margalit H.

Proc Natl Acad Sci U S A. 2006 Oct 3;103(40):14718-23. Epub 2006 Sep 26.

7.

Bootstrapping the interactome: unsupervised identification of protein complexes in yeast.

Friedel CC, Krumsiek J, Zimmer R.

J Comput Biol. 2009 Aug;16(8):971-87. doi: 10.1089/cmb.2009.0023.

PMID:
19630542
8.

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF.

Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.

PMID:
16554755
9.

Identifying functional modules in the physical interactome of Saccharomyces cerevisiae.

Pu S, Vlasblom J, Emili A, Greenblatt J, Wodak SJ.

Proteomics. 2007 Mar;7(6):944-60.

PMID:
17370254
10.

Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae.

Collins SR, Kemmeren P, Zhao XC, Greenblatt JF, Spencer F, Holstege FC, Weissman JS, Krogan NJ.

Mol Cell Proteomics. 2007 Mar;6(3):439-50. Epub 2007 Jan 2.

11.

A Bayesian networks approach for predicting protein-protein interactions from genomic data.

Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M.

Science. 2003 Oct 17;302(5644):449-53.

12.

Determining protein complex connectivity using a probabilistic deletion network derived from quantitative proteomics.

Sardiu ME, Gilmore JM, Carrozza MJ, Li B, Workman JL, Florens L, Washburn MP.

PLoS One. 2009 Oct 6;4(10):e7310. doi: 10.1371/journal.pone.0007310.

13.

The Cartographers toolbox: building bigger and better human protein interaction networks.

Sanderson CM.

Brief Funct Genomic Proteomic. 2009 Jan;8(1):1-11. doi: 10.1093/bfgp/elp003. Epub 2009 Mar 12. Review.

14.

Quantitative assessment of the structural bias in protein-protein interaction assays.

Björklund AK, Light S, Hedin L, Elofsson A.

Proteomics. 2008 Nov;8(22):4657-67. doi: 10.1002/pmic.200800150.

PMID:
18924110
15.

Pushing structural information into the yeast interactome by high-throughput protein docking experiments.

Mosca R, Pons C, Fernández-Recio J, Aloy P.

PLoS Comput Biol. 2009 Aug;5(8):e1000490. doi: 10.1371/journal.pcbi.1000490. Epub 2009 Aug 28.

16.

Predicting protein complexes by data integration of different types of interactions.

Tan PP, Dargahi D, Pio F.

Int J Comput Biol Drug Des. 2010;3(1):19-30. doi: 10.1504/IJCBDD.2010.034464. Epub 2010 Aug 5.

PMID:
20693608
17.

Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.

Del Mondo G, Eveillard D, Rusu I.

Bioinformatics. 2009 Apr 1;25(7):926-32. doi: 10.1093/bioinformatics/btp083. Epub 2009 Feb 17.

18.

Interactive proteomics research technologies: recent applications and advances.

Petschnigg J, Snider J, Stagljar I.

Curr Opin Biotechnol. 2011 Feb;22(1):50-8. doi: 10.1016/j.copbio.2010.09.001. Epub 2010 Sep 29. Review.

PMID:
20884196
19.

Incorporating high-throughput proteomics experiments into structural biology pipelines: identification of the low-hanging fruits.

Pache RA, Aloy P.

Proteomics. 2008 May;8(10):1959-64. doi: 10.1002/pmic.200700966.

PMID:
18491310
20.

Dynamic proteomics in modeling of the living cell. Protein-protein interactions.

Terentiev AA, Moldogazieva NT, Shaitan KV.

Biochemistry (Mosc). 2009 Dec;74(13):1586-607. Review.

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