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Results: 1 to 20 of 222

1.

High-quality binary protein interaction map of the yeast interactome network.

Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, de Smet AS, Motyl A, Hudson ME, Park J, Xin X, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, Barabási AL, Tavernier J, Hill DE, Vidal M.

Science. 2008 Oct 3;322(5898):104-10. doi: 10.1126/science.1158684. Epub 2008 Aug 21.

PMID:
18719252
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A novel scoring approach for protein co-purification data reveals high interaction specificity.

Yu X, Ivanic J, Wallqvist A, Reifman J.

PLoS Comput Biol. 2009 Sep;5(9):e1000515. doi: 10.1371/journal.pcbi.1000515. Epub 2009 Sep 25.

PMID:
19779545
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The Cartographers toolbox: building bigger and better human protein interaction networks.

Sanderson CM.

Brief Funct Genomic Proteomic. 2009 Jan;8(1):1-11. doi: 10.1093/bfgp/elp003. Epub 2009 Mar 12. Review.

PMID:
19282470
[PubMed - indexed for MEDLINE]
Free Article
4.

Information flow analysis of interactome networks.

Missiuro PV, Liu K, Zou L, Ross BC, Zhao G, Liu JS, Ge H.

PLoS Comput Biol. 2009 Apr;5(4):e1000350. doi: 10.1371/journal.pcbi.1000350. Epub 2009 Apr 10.

PMID:
19503817
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A map of the interactome network of the metazoan C. elegans.

Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF, Jacotot L, Vaglio P, Reboul J, Hirozane-Kishikawa T, Li Q, Gabel HW, Elewa A, Baumgartner B, Rose DJ, Yu H, Bosak S, Sequerra R, Fraser A, Mango SE, Saxton WM, Strome S, Van Den Heuvel S, Piano F, Vandenhaute J, Sardet C, Gerstein M, Doucette-Stamm L, Gunsalus KC, Harper JW, Cusick ME, Roth FP, Hill DE, Vidal M.

Science. 2004 Jan 23;303(5657):540-3. Epub 2004 Jan 2.

PMID:
14704431
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The bait compatibility index: computational bait selection for interaction proteomics experiments.

Saha S, Kaur P, Ewing RM.

J Proteome Res. 2010 Oct 1;9(10):4972-81. doi: 10.1021/pr100267t.

PMID:
20731387
[PubMed - indexed for MEDLINE]
7.

Strategies towards high-quality binary protein interactome maps.

Lemmens I, Lievens S, Tavernier J.

J Proteomics. 2010 Jun 16;73(8):1415-20. doi: 10.1016/j.jprot.2010.02.001. Epub 2010 Feb 12.

PMID:
20153845
[PubMed - indexed for MEDLINE]
8.

An empirical framework for binary interactome mapping.

Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, Cevik S, Simon C, de Smet AS, Dann E, Smolyar A, Vinayagam A, Yu H, Szeto D, Borick H, Dricot A, Klitgord N, Murray RR, Lin C, Lalowski M, Timm J, Rau K, Boone C, Braun P, Cusick ME, Roth FP, Hill DE, Tavernier J, Wanker EE, Barabási AL, Vidal M.

Nat Methods. 2009 Jan;6(1):83-90. doi: 10.1038/nmeth.1280. Epub 2008 Dec 7.

PMID:
19060904
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Towards a proteome-scale map of the human protein-protein interaction network.

Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M.

Nature. 2005 Oct 20;437(7062):1173-8. Epub 2005 Sep 28.

PMID:
16189514
[PubMed - indexed for MEDLINE]
10.

The Cross-and-Capture system: a versatile tool in yeast proteomics.

Suter B.

Methods. 2012 Dec;58(4):360-6. doi: 10.1016/j.ymeth.2012.07.017. Epub 2012 Jul 24.

PMID:
22836129
[PubMed - indexed for MEDLINE]
11.

Yeast two-hybrid contributions to interactome mapping.

Parrish JR, Gulyas KD, Finley RL Jr.

Curr Opin Biotechnol. 2006 Aug;17(4):387-93. Epub 2006 Jun 27. Review.

PMID:
16806892
[PubMed - indexed for MEDLINE]
12.

Interactome mapping for analysis of complex phenotypes: insights from benchmarking binary interaction assays.

Braun P.

Proteomics. 2012 May;12(10):1499-518. doi: 10.1002/pmic.201100598. Review.

PMID:
22589225
[PubMed - indexed for MEDLINE]
13.

Functional organization of the yeast proteome by a yeast interactome map.

Valente AX, Roberts SB, Buck GA, Gao Y.

Proc Natl Acad Sci U S A. 2009 Feb 3;106(5):1490-5. doi: 10.1073/pnas.0808624106. Epub 2009 Jan 21.

PMID:
19164585
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Analysis of protein-protein interactions using array-based yeast two-hybrid screens.

Rajagopala SV, Uetz P.

Methods Mol Biol. 2009;548:223-45. doi: 10.1007/978-1-59745-540-4_13.

PMID:
19521828
[PubMed - indexed for MEDLINE]
15.

A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.

Hart GT, Lee I, Marcotte ER.

BMC Bioinformatics. 2007 Jul 2;8:236.

PMID:
17605818
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

High-quality binary interactome mapping.

Dreze M, Monachello D, Lurin C, Cusick ME, Hill DE, Vidal M, Braun P.

Methods Enzymol. 2010;470:281-315. doi: 10.1016/S0076-6879(10)70012-4. Epub 2010 Mar 1.

PMID:
20946815
[PubMed - indexed for MEDLINE]
17.

Effect of sampling on topology predictions of protein-protein interaction networks.

Han JD, Dupuy D, Bertin N, Cusick ME, Vidal M.

Nat Biotechnol. 2005 Jul;23(7):839-44.

PMID:
16003372
[PubMed - indexed for MEDLINE]
18.

Evaluation of clustering algorithms for protein-protein interaction networks.

Brohée S, van Helden J.

BMC Bioinformatics. 2006 Nov 6;7:488.

PMID:
17087821
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

On the number of protein-protein interactions in the yeast proteome.

Grigoriev A.

Nucleic Acids Res. 2003 Jul 15;31(14):4157-61.

PMID:
12853633
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways.

Das J, Vo TV, Wei X, Mellor JC, Tong V, Degatano AG, Wang X, Wang L, Cordero NA, Kruer-Zerhusen N, Matsuyama A, Pleiss JA, Lipkin SM, Yoshida M, Roth FP, Yu H.

Sci Signal. 2013 May 21;6(276):ra38. doi: 10.1126/scisignal.2003350.

PMID:
23695164
[PubMed - indexed for MEDLINE]
Free PMC Article

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