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Items: 1 to 20 of 125

1.

iTools: a framework for classification, categorization and integration of computational biology resources.

Dinov ID, Rubin D, Lorensen W, Dugan J, Ma J, Murphy S, Kirschner B, Bug W, Sherman M, Floratos A, Kennedy D, Jagadish HV, Schmidt J, Athey B, Califano A, Musen M, Altman R, Kikinis R, Kohane I, Delp S, Parker DS, Toga AW.

PLoS One. 2008 May 28;3(5):e2265. doi: 10.1371/journal.pone.0002265.

2.

Applications of the pipeline environment for visual informatics and genomics computations.

Dinov ID, Torri F, Macciardi F, Petrosyan P, Liu Z, Zamanyan A, Eggert P, Pierce J, Genco A, Knowles JA, Clark AP, Van Horn JD, Ames J, Kesselman C, Toga AW.

BMC Bioinformatics. 2011 Jul 26;12:304. doi: 10.1186/1471-2105-12-304.

3.

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.

Bandrowski AE, Cachat J, Li Y, Müller HM, Sternberg PW, Ciccarese P, Clark T, Marenco L, Wang R, Astakhov V, Grethe JS, Martone ME.

Database (Oxford). 2012 Mar 20;2012:bas005. doi: 10.1093/database/bas005. Print 2012.

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5.

BioModels.net Web Services, a free and integrated toolkit for computational modelling software.

Li C, Courtot M, Le Novère N, Laibe C.

Brief Bioinform. 2010 May;11(3):270-7. doi: 10.1093/bib/bbp056. Epub 2009 Nov 25.

6.

A repository based on a dynamically extensible data model supporting multidisciplinary research in neuroscience.

Corradi L, Porro I, Schenone A, Momeni P, Ferrari R, Nobili F, Ferrara M, Arnulfo G, Fato MM.

BMC Med Inform Decis Mak. 2012 Oct 8;12:115. doi: 10.1186/1472-6947-12-115.

7.

caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Oster S, Langella S, Hastings S, Ervin D, Madduri R, Phillips J, Kurc T, Siebenlist F, Covitz P, Shanbhag K, Foster I, Saltz J.

J Am Med Inform Assoc. 2008 Mar-Apr;15(2):138-49. Epub 2007 Dec 20.

8.

MetaBasis: a web-based database containing metadata on software tools and databases in the field of bioinformatics.

Atlamazoglou V, Thireou T, Hamodrakas Y, Spyrou G.

Appl Bioinformatics. 2006;5(3):187-92.

PMID:
16922600
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11.

The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research.

Tenenbaum JD, Whetzel PL, Anderson K, Borromeo CD, Dinov ID, Gabriel D, Kirschner B, Mirel B, Morris T, Noy N, Nyulas C, Rubenson D, Saxman PR, Singh H, Whelan N, Wright Z, Athey BD, Becich MJ, Ginsburg GS, Musen MA, Smith KA, Tarantal AF, Rubin DL, Lyster P.

J Biomed Inform. 2011 Feb;44(1):137-45. doi: 10.1016/j.jbi.2010.10.003. Epub 2010 Oct 16.

12.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

13.

Automation of in-silico data analysis processes through workflow management systems.

Romano P.

Brief Bioinform. 2008 Jan;9(1):57-68. Epub 2007 Dec 2. Review.

14.

ExPASy: SIB bioinformatics resource portal.

Artimo P, Jonnalagedda M, Arnold K, Baratin D, Csardi G, de Castro E, Duvaud S, Flegel V, Fortier A, Gasteiger E, Grosdidier A, Hernandez C, Ioannidis V, Kuznetsov D, Liechti R, Moretti S, Mostaguir K, Redaschi N, Rossier G, Xenarios I, Stockinger H.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W597-603. doi: 10.1093/nar/gks400. Epub 2012 May 31.

15.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

16.

An OGSA-based integration of life-scientific resources for drug discovery.

Kosaka T, Tohsato Y, Date S, Matsuda H, Shimojo S.

Methods Inf Med. 2005;44(2):257-61.

PMID:
15924187
17.

Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group.

Mooney SD, Baenziger PH.

Brief Bioinform. 2008 Jan;9(1):69-74. Epub 2007 Dec 5. Review.

18.

Mediator infrastructure for information integration and semantic data integration environment for biomedical research.

Grethe JS, Ross E, Little D, Sanders B, Gupta A, Astakhov V.

Methods Mol Biol. 2009;569:33-53. doi: 10.1007/978-1-59745-524-4_3.

PMID:
19623485
19.

Web services and workflow management for biological resources.

Romano P, Marra D, Milanesi L.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S24.

20.

Workflow based framework for life science informatics.

Tiwari A, Sekhar AK.

Comput Biol Chem. 2007 Oct;31(5-6):305-19. Epub 2007 Aug 19. Review.

PMID:
17931570
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