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Results: 1 to 20 of 100

1.

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.

Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM.

Genome Res. 2008 Jul;18(7):1051-63. doi: 10.1101/gr.076463.108. Epub 2008 May 13.

PMID:
18477713
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin.

Johnson SM, Tan FJ, McCullough HL, Riordan DP, Fire AZ.

Genome Res. 2006 Dec;16(12):1505-16. Epub 2006 Oct 12.

PMID:
17038564
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Global remodeling of nucleosome positions in C. elegans.

Locke G, Haberman D, Johnson SM, Morozov AV.

BMC Genomics. 2013 Apr 26;14:284. doi: 10.1186/1471-2164-14-284.

PMID:
23622142
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Sequence signatures of nucleosome positioning in Caenorhabditis elegans.

Chen K, Wang L, Yang M, Liu J, Xin C, Hu S, Yu J.

Genomics Proteomics Bioinformatics. 2010 Jun;8(2):92-102. doi: 10.1016/S1672-0229(10)60010-1.

PMID:
20691394
[PubMed - indexed for MEDLINE]
Free Article
5.

Single-base resolution nucleosome mapping on DNA sequences.

Gabdank I, Barash D, Trifonov EN.

J Biomol Struct Dyn. 2010 Aug;28(1):107-22.

PMID:
20476799
[PubMed - indexed for MEDLINE]
6.

Nucleosome DNA bendability matrix (C. elegans).

Gabdank I, Barash D, Trifonov EN.

J Biomol Struct Dyn. 2009 Feb;26(4):403-11.

PMID:
19108579
[PubMed - indexed for MEDLINE]
7.

Nucleosome positioning, nucleosome spacing and the nucleosome code.

Clark DJ.

J Biomol Struct Dyn. 2010 Jun;27(6):781-93.

PMID:
20232933
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Painting a perspective on the landscape of nucleosome positioning.

Johnson SM.

J Biomol Struct Dyn. 2010 Jun;27(6):795-802.

PMID:
20232934
[PubMed - indexed for MEDLINE]
9.

Structure-based analysis of DNA sequence patterns guiding nucleosome positioning in vitro.

Cui F, Zhurkin VB.

J Biomol Struct Dyn. 2010 Jun;27(6):821-41.

PMID:
20232936
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Prediction of nucleosome positioning in genomes: limits and perspectives of physical and bioinformatic approaches.

De Santis P, Morosetti S, Scipioni A.

J Biomol Struct Dyn. 2010 Jun;27(6):747-64.

PMID:
20232931
[PubMed - indexed for MEDLINE]
11.

Three sequence rules for chromatin.

Cohanim AB, Kashi Y, Trifonov EN.

J Biomol Struct Dyn. 2006 Apr;23(5):559-66.

PMID:
16494506
[PubMed - indexed for MEDLINE]
12.

Chromatin structure of the yeast URA3 gene at high resolution provides insight into structure and positioning of nucleosomes in the chromosomal context.

Tanaka S, Livingstone-Zatchej M, Thoma F.

J Mol Biol. 1996 Apr 19;257(5):919-34.

PMID:
8632475
[PubMed - indexed for MEDLINE]
13.

Controls of nucleosome positioning in the human genome.

Gaffney DJ, McVicker G, Pai AA, Fondufe-Mittendorf YN, Lewellen N, Michelini K, Widom J, Gilad Y, Pritchard JK.

PLoS Genet. 2012;8(11):e1003036. doi: 10.1371/journal.pgen.1003036. Epub 2012 Nov 15.

PMID:
23166509
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes.

Westenberger SJ, Cui L, Dharia N, Winzeler E, Cui L.

BMC Genomics. 2009 Dec 16;10:610. doi: 10.1186/1471-2164-10-610.

PMID:
20015349
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

FineStr: a web server for single-base-resolution nucleosome positioning.

Gabdank I, Barash D, Trifonov EN.

Bioinformatics. 2010 Mar 15;26(6):845-6. doi: 10.1093/bioinformatics/btq030. Epub 2010 Jan 26.

PMID:
20106816
[PubMed - indexed for MEDLINE]
Free Article
16.

High-throughput mapping of the chromatin structure of human promoters.

Ozsolak F, Song JS, Liu XS, Fisher DE.

Nat Biotechnol. 2007 Feb;25(2):244-8. Epub 2007 Jan 14.

PMID:
17220878
[PubMed - indexed for MEDLINE]
17.

Nucleosome positioning by sequence, state of the art and apparent finale.

Trifonov EN.

J Biomol Struct Dyn. 2010 Jun;27(6):741-6.

PMID:
20232930
[PubMed - indexed for MEDLINE]
18.

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R.

BMC Genomics. 2009 Feb 25;10:92. doi: 10.1186/1471-2164-10-92.

PMID:
19243610
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Combined micrococcal nuclease and exonuclease III digestion reveals precise positions of the nucleosome core/linker junctions: implications for high-resolution nucleosome mapping.

Nikitina T, Wang D, Gomberg M, Grigoryev SA, Zhurkin VB.

J Mol Biol. 2013 Jun 12;425(11):1946-60. doi: 10.1016/j.jmb.2013.02.026. Epub 2013 Feb 28.

PMID:
23458408
[PubMed - indexed for MEDLINE]
20.

Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning.

Gu SG, Fire A.

Chromosoma. 2010 Feb;119(1):73-87. doi: 10.1007/s00412-009-0235-3. Epub 2009 Aug 25.

PMID:
19705140
[PubMed - indexed for MEDLINE]
Free PMC Article

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