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Results: 1 to 20 of 102

1.

The minimum information about a genome sequence (MIGS) specification.

Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A.

Nat Biotechnol. 2008 May;26(5):541-7. doi: 10.1038/nbt1360.

PMID:
18464787
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Biological information: making it accessible and integrated (and trying to make sense of it).

Hubbard T.

Bioinformatics. 2002;18 Suppl 2:S140.

PMID:
12385995
[PubMed - indexed for MEDLINE]
Free Article
3.

Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard.

Duhaime MB, Kottmann R, Field D, Glöckner FO.

Stand Genomic Sci. 2011 Apr 29;4(2):271-85. doi: 10.4056/sigs.621069.

PMID:
21677864
[PubMed]
Free PMC Article
4.

Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7.

Field D, Sterk P, Kyrpides N, Kottmann R, Glöckner FO, Hirschman L, Garrity GM, Wooley J, Gilna P.

Stand Genomic Sci. 2009 Jul 20;1(1):68-71. doi: 10.4056/sigs.25165.

PMID:
21304639
[PubMed]
Free PMC Article
5.

A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML).

Kottmann R, Gray T, Murphy S, Kagan L, Kravitz S, Lombardot T, Field D, Glöckner FO; Genomic Standards Consortium.

OMICS. 2008 Jun;12(2):115-21. doi: 10.1089/omi.2008.0A10.

PMID:
18479204
[PubMed - indexed for MEDLINE]
6.

Should software hold data hostage?

Wiley HS, Michaels GS.

Nat Biotechnol. 2004 Aug;22(8):1037-8. No abstract available.

PMID:
15286656
[PubMed - indexed for MEDLINE]
7.

Meeting report: the fourth Genomic Standards Consortium (GSC) workshop.

Field D, Glöckner FO, Garrity GM, Gray T, Sterk P, Cochrane G, Vaughan R, Kolker E, Kottmann R, Kyrpides N, Angiuoli S, Dawyndt P, Guralnick R, Goldstein P, Hall N, Hirschman L, Kravitz S, Lister AL, Markowitz V, Thomson N, Whetzel T.

OMICS. 2008 Jun;12(2):101-8. doi: 10.1089/omi.2008.0014.

PMID:
18564914
[PubMed - indexed for MEDLINE]
8.

Metadata matters: access to image data in the real world.

Linkert M, Rueden CT, Allan C, Burel JM, Moore W, Patterson A, Loranger B, Moore J, Neves C, Macdonald D, Tarkowska A, Sticco C, Hill E, Rossner M, Eliceiri KW, Swedlow JR.

J Cell Biol. 2010 May 31;189(5):777-82. doi: 10.1083/jcb.201004104.

PMID:
20513764
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO.

Nat Biotechnol. 2011 May;29(5):415-20. doi: 10.1038/nbt.1823.

PMID:
21552244
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

International unions concerned about biodata.

Garnier J, Berendsen HJ.

Nature. 2002 Oct 24;419(6909):777. No abstract available.

PMID:
12397324
[PubMed - indexed for MEDLINE]
11.

Enriching the trustworthiness of health-related web pages.

Gaudinat A, Cruchet S, Boyer C, Chrawdhry P.

Health Informatics J. 2011 Jun;17(2):116-26. doi: 10.1177/1460458211405006.

PMID:
21712355
[PubMed - indexed for MEDLINE]
12.

Extending Standards for Genomics and Metagenomics Data: A Research Coordination Network for the Genomic Standards Consortium (RCN4GSC).

Wooley JC, Field D, Glöckner FO.

Stand Genomic Sci. 2009 Jul 20;1(1):87-90. doi: 10.4056/sigs.26218.

PMID:
21304642
[PubMed]
Free PMC Article
13.

Genomic sequence information should be released immediately and freely in the public domain.

Bentley DR.

Science. 1996 Oct 25;274(5287):533-4. No abstract available.

PMID:
8928006
[PubMed - indexed for MEDLINE]
14.

A common open representation of mass spectrometry data and its application to proteomics research.

Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R.

Nat Biotechnol. 2004 Nov;22(11):1459-66.

PMID:
15529173
[PubMed - indexed for MEDLINE]
15.

Challenges and opportunities of open data in ecology.

Reichman OJ, Jones MB, Schildhauer MP.

Science. 2011 Feb 11;331(6018):703-5. doi: 10.1126/science.1197962.

PMID:
21311007
[PubMed - indexed for MEDLINE]
16.

e-Science and its implications.

Hey T, Trefethen A.

Philos Trans A Math Phys Eng Sci. 2003 Aug 15;361(1809):1809-25. Review.

PMID:
12952686
[PubMed - indexed for MEDLINE]
17.

Habitat-Lite: a GSC case study based on free text terms for environmental metadata.

Hirschman L, Clark C, Cohen KB, Mardis S, Luciano J, Kottmann R, Cole J, Markowitz V, Kyrpides N, Morrison N, Schriml LM, Field D; Novo Project.

OMICS. 2008 Jun;12(2):129-36. doi: 10.1089/omi.2008.0016.

PMID:
18416669
[PubMed - indexed for MEDLINE]
18.

Defining linkages between the GSC and NSF's LTER program: how the Ecological Metadata Language (EML) relates to GCDML and other outcomes.

Gil IS, Sheldon W, Schmidt T, Servilla M, Aguilar R, Gries C, Gray T, Field D, Cole J, Pan JY, Palanisamy G, Henshaw D, O'Brien M, Kinkel L, McMahon K, Kottmann R, Amaral-Zettler L, Hobbie J, Goldstein P, Guralnick RP, Brunt J, Michener WK.

OMICS. 2008 Jun;12(2):151-6. doi: 10.1089/omi.2008.0015.

PMID:
18407745
[PubMed - indexed for MEDLINE]
19.

[Evidence-based medicine for the public].

Lang B, Sänger S.

Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2005 Jun;48(6):679-84. German.

PMID:
15983845
[PubMed - indexed for MEDLINE]
20.

The minimum information required for reporting a molecular interaction experiment (MIMIx).

Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M, Stümpflen V, Ceol A, Chatr-aryamontri A, Armstrong J, Woollard P, Salama JJ, Moore S, Wojcik J, Bader GD, Vidal M, Cusick ME, Gerstein M, Gavin AC, Superti-Furga G, Greenblatt J, Bader J, Uetz P, Tyers M, Legrain P, Fields S, Mulder N, Gilson M, Niepmann M, Burgoon L, De Las Rivas J, Prieto C, Perreau VM, Hogue C, Mewes HW, Apweiler R, Xenarios I, Eisenberg D, Cesareni G, Hermjakob H.

Nat Biotechnol. 2007 Aug;25(8):894-8. Review.

PMID:
17687370
[PubMed - indexed for MEDLINE]

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