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Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes.

Tam OH, Aravin AA, Stein P, Girard A, Murchison EP, Cheloufi S, Hodges E, Anger M, Sachidanandam R, Schultz RM, Hannon GJ.

Nature. 2008 May 22;453(7194):534-8. doi: 10.1038/nature06904. Epub 2008 Apr 10.


Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes.

Watanabe T, Totoki Y, Toyoda A, Kaneda M, Kuramochi-Miyagawa S, Obata Y, Chiba H, Kohara Y, Kono T, Nakano T, Surani MA, Sakaki Y, Sasaki H.

Nature. 2008 May 22;453(7194):539-43. doi: 10.1038/nature06908. Epub 2008 Apr 10.


Small RNAs originated from pseudogenes: cis- or trans-acting?

Guo X, Zhang Z, Gerstein MB, Zheng D.

PLoS Comput Biol. 2009 Jul;5(7):e1000449. doi: 10.1371/journal.pcbi.1000449. Epub 2009 Jul 31.


The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications.

Fischer SE, Montgomery TA, Zhang C, Fahlgren N, Breen PC, Hwang A, Sullivan CM, Carrington JC, Ruvkun G.

PLoS Genet. 2011 Nov;7(11):e1002369. doi: 10.1371/journal.pgen.1002369. Epub 2011 Nov 10.


Essential Role for endogenous siRNAs during meiosis in mouse oocytes.

Stein P, Rozhkov NV, Li F, Cárdenas FL, Davydenko O, Vandivier LE, Gregory BD, Hannon GJ, Schultz RM.

PLoS Genet. 2015 Feb 19;11(2):e1005013. doi: 10.1371/journal.pgen.1005013. eCollection 2015 Feb. Erratum in: PLoS Genet. 2015 Apr;11(4):e1005129.


Male germ cells express abundant endogenous siRNAs.

Song R, Hennig GW, Wu Q, Jose C, Zheng H, Yan W.

Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13159-64. doi: 10.1073/pnas.1108567108. Epub 2011 Jul 25.


Pseudogenes as competitive endogenous RNAs: target prediction and validation.

Karreth FA, Ala U, Provero P, Pandolfi PP.

Methods Mol Biol. 2014;1167:199-212. doi: 10.1007/978-1-4939-0835-6_13.


Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells.

Ghildiyal M, Seitz H, Horwich MD, Li C, Du T, Lee S, Xu J, Kittler EL, Zapp ML, Weng Z, Zamore PD.

Science. 2008 May 23;320(5879):1077-81. doi: 10.1126/science.1157396. Epub 2008 Apr 10.


Endogenous siRNAs: regulators of internal affairs.

Piatek MJ, Werner A.

Biochem Soc Trans. 2014 Aug;42(4):1174-9. doi: 10.1042/BST20140068. Review.


Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans.

Pavelec DM, Lachowiec J, Duchaine TF, Smith HE, Kennedy S.

Genetics. 2009 Dec;183(4):1283-95. doi: 10.1534/genetics.109.108134. Epub 2009 Sep 21.


Small RNA profiling and characterization of piRNA clusters in the adult testes of the common marmoset, a model primate.

Hirano T, Iwasaki YW, Lin ZY, Imamura M, Seki NM, Sasaki E, Saito K, Okano H, Siomi MC, Siomi H.

RNA. 2014 Aug;20(8):1223-37. doi: 10.1261/rna.045310.114. Epub 2014 Jun 9.


Tupaia small RNAs provide insights into function and evolution of RNAi-based transposon defense in mammals.

Rosenkranz D, Rudloff S, Bastuck K, Ketting RF, Zischler H.

RNA. 2015 May;21(5):911-22. doi: 10.1261/rna.048603.114. Epub 2015 Mar 23.


A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes.

Flemr M, Malik R, Franke V, Nejepinska J, Sedlacek R, Vlahovicek K, Svoboda P.

Cell. 2013 Nov 7;155(4):807-16. doi: 10.1016/j.cell.2013.10.001.


Diverse small non-coding RNAs in RNA interference pathways.

Li L, Liu Y.

Methods Mol Biol. 2011;764:169-82. doi: 10.1007/978-1-61779-188-8_11. Review.


Profiles of small non-coding RNAs in Schistosoma japonicum during development.

Cai P, Hou N, Piao X, Liu S, Liu H, Yang F, Wang J, Jin Q, Wang H, Chen Q.

PLoS Negl Trop Dis. 2011 Aug;5(8):e1256. doi: 10.1371/journal.pntd.0001256. Epub 2011 Aug 2.


Pseudogene-derived small interference RNAs regulate gene expression in African Trypanosoma brucei.

Wen YZ, Zheng LL, Liao JY, Wang MH, Wei Y, Guo XM, Qu LH, Ayala FJ, Lun ZR.

Proc Natl Acad Sci U S A. 2011 May 17;108(20):8345-50. doi: 10.1073/pnas.1103894108. Epub 2011 Apr 29.


Microarray analysis of Drosophila dicer-2 mutants reveals potential regulation of mitochondrial metabolism by endogenous siRNAs.

Lim DH, Lee L, Oh CT, Kim NH, Hwang S, Han SJ, Lee YS.

J Cell Biochem. 2013 Feb;114(2):418-27. doi: 10.1002/jcb.24379.


Not so pseudo anymore: pseudogenes as therapeutic targets.

Roberts TC, Morris KV.

Pharmacogenomics. 2013 Dec;14(16):2023-34. doi: 10.2217/pgs.13.172.


Pseudogene-derived endogenous siRNAs and their function.

Chan WL, Chang JG.

Methods Mol Biol. 2014;1167:227-39. doi: 10.1007/978-1-4939-0835-6_15. Review.


Endogenous siRNAs and noncoding RNA-derived small RNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training.

Smalheiser NR, Lugli G, Thimmapuram J, Cook EH, Larson J.

RNA. 2011 Jan;17(1):166-81. doi: 10.1261/rna.2123811. Epub 2010 Nov 2.

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