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Results: 1 to 20 of 170

Similar articles for PubMed (Select 18402978)

1.

A large collapsed-state RNA can exhibit simple exponential single-molecule dynamics.

Smith GJ, Lee KT, Qu X, Xie Z, Pesic J, Sosnick TR, Pan T, Scherer NF.

J Mol Biol. 2008 May 9;378(4):943-53. doi: 10.1016/j.jmb.2008.01.078. Epub 2008 Feb 4.

PMID:
18402978
2.

Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA.

Qu X, Smith GJ, Lee KT, Sosnick TR, Pan T, Scherer NF.

Proc Natl Acad Sci U S A. 2008 May 6;105(18):6602-7. doi: 10.1073/pnas.0801436105. Epub 2008 Apr 30.

3.

Models of single-molecule experiments with periodic perturbations reveal hidden dynamics in RNA folding.

Li Y, Qu X, Ma A, Smith GJ, Scherer NF, Dinner AR.

J Phys Chem B. 2009 May 28;113(21):7579-90. doi: 10.1021/jp900225q.

PMID:
19415919
4.

Near native structure in an RNA collapsed state.

Buchmueller KL, Weeks KM.

Biochemistry. 2003 Dec 2;42(47):13869-78.

PMID:
14636054
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6.
7.

An early transition state for folding of the P4-P6 RNA domain.

Silverman SK, Cech TR.

RNA. 2001 Feb;7(2):161-6.

8.

A collapsed non-native RNA folding state.

Buchmueller KL, Webb AE, Richardson DA, Weeks KM.

Nat Struct Biol. 2000 May;7(5):362-6.

PMID:
10802730
9.

Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET.

Hodak JH, Downey CD, Fiore JL, Pardi A, Nesbitt DJ.

Proc Natl Acad Sci U S A. 2005 Jul 26;102(30):10505-10. Epub 2005 Jul 15. Erratum in: Proc Natl Acad Sci U S A. 2005 Sep 13;102(37):13351.

10.

RNA conformation and folding studied with fluorescence resonance energy transfer.

Klostermeier D, Millar DP.

Methods. 2001 Mar;23(3):240-54. Review.

PMID:
11243837
11.

Measuring the folding transition time of single RNA molecules.

Lee TH, Lapidus LJ, Zhao W, Travers KJ, Herschlag D, Chu S.

Biophys J. 2007 May 1;92(9):3275-83. Epub 2007 Feb 16.

12.

Single-molecule transition-state analysis of RNA folding.

Bokinsky G, Rueda D, Misra VK, Rhodes MM, Gordus A, Babcock HP, Walter NG, Zhuang X.

Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9302-7. Epub 2003 Jul 17.

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15.

Structural basis for the self-chaperoning function of an RNA collapsed state.

Garcia I, Weeks KM.

Biochemistry. 2004 Dec 7;43(48):15179-86.

PMID:
15568809
16.
17.

A rugged free energy landscape separates multiple functional RNA folds throughout denaturation.

Ditzler MA, Rueda D, Mo J, Håkansson K, Walter NG.

Nucleic Acids Res. 2008 Dec;36(22):7088-99. doi: 10.1093/nar/gkn871. Epub 2008 Nov 6.

18.

The fastest global events in RNA folding: electrostatic relaxation and tertiary collapse of the Tetrahymena ribozyme.

Das R, Kwok LW, Millett IS, Bai Y, Mills TT, Jacob J, Maskel GS, Seifert S, Mochrie SG, Thiyagarajan P, Doniach S, Pollack L, Herschlag D.

J Mol Biol. 2003 Sep 12;332(2):311-9.

PMID:
12948483
19.

Folding of human telomerase RNA pseudoknot using ion-jump and temperature-quench simulations.

Biyun S, Cho SS, Thirumalai D.

J Am Chem Soc. 2011 Dec 21;133(50):20634-43. doi: 10.1021/ja2092823. Epub 2011 Nov 30.

PMID:
22082261
20.

Simulating RNA folding kinetics on approximated energy landscapes.

Tang X, Thomas S, Tapia L, Giedroc DP, Amato NM.

J Mol Biol. 2008 Sep 12;381(4):1055-67. doi: 10.1016/j.jmb.2008.02.007. Epub 2008 Feb 13. Erratum in: J Mol Biol. 2009 Mar 27;387(2):522.

PMID:
18639245
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