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Results: 1 to 20 of 100

1.

Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p.

Miller MT, Higgin JJ, Hall TM.

Nat Struct Mol Biol. 2008 Apr;15(4):397-402. doi: 10.1038/nsmb.1390. Epub 2008 Mar 9.

PMID:
18327269
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Patterns and plasticity in RNA-protein interactions enable recruitment of multiple proteins through a single site.

Valley CT, Porter DF, Qiu C, Campbell ZT, Hall TM, Wickens M.

Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6054-9. doi: 10.1073/pnas.1200521109. Epub 2012 Mar 30.

PMID:
22467831
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity.

Gupta YK, Nair DT, Wharton RP, Aggarwal AK.

Structure. 2008 Apr;16(4):549-57. doi: 10.1016/j.str.2008.01.006. Epub 2008 Mar 6.

PMID:
18328718
[PubMed - indexed for MEDLINE]
Free Article
4.

A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs.

Zhu D, Stumpf CR, Krahn JM, Wickens M, Hall TM.

Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20192-7. doi: 10.1073/pnas.0812079106. Epub 2009 Nov 16.

PMID:
19918084
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Sequence-specific recognition of RNA hairpins by the SAM domain of Vts1p.

Aviv T, Lin Z, Ben-Ari G, Smibert CA, Sicheri F.

Nat Struct Mol Biol. 2006 Feb;13(2):168-76. Epub 2006 Jan 22.

PMID:
16429151
[PubMed - indexed for MEDLINE]
6.

Divergence of Pumilio/fem-3 mRNA binding factor (PUF) protein specificity through variations in an RNA-binding pocket.

Qiu C, Kershner A, Wang Y, Holley CP, Wilinski D, Keles S, Kimble J, Wickens M, Hall TM.

J Biol Chem. 2012 Feb 24;287(9):6949-57. doi: 10.1074/jbc.M111.326264. Epub 2011 Dec 28.

PMID:
22205700
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A single spacer nucleotide determines the specificities of two mRNA regulatory proteins.

Opperman L, Hook B, DeFino M, Bernstein DS, Wickens M.

Nat Struct Mol Biol. 2005 Nov;12(11):945-51.

PMID:
16244662
[PubMed - indexed for MEDLINE]
8.

Specific and modular binding code for cytosine recognition in Pumilio/FBF (PUF) RNA-binding domains.

Dong S, Wang Y, Cassidy-Amstutz C, Lu G, Bigler R, Jezyk MR, Li C, Hall TM, Wang Z.

J Biol Chem. 2011 Jul 29;286(30):26732-42. doi: 10.1074/jbc.M111.244889. Epub 2011 Jun 8.

PMID:
21653694
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A universal code for RNA recognition by PUF proteins.

Filipovska A, Razif MF, Nygård KK, Rackham O.

Nat Chem Biol. 2011 May 15;7(7):425-7. doi: 10.1038/nchembio.577.

PMID:
21572425
[PubMed - indexed for MEDLINE]
10.

Puf1p acts in combination with other yeast Puf proteins to control mRNA stability.

Ulbricht RJ, Olivas WM.

RNA. 2008 Feb;14(2):246-62. Epub 2007 Dec 19.

PMID:
18094119
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Increase in backbone mobility of the VTS1p-SAM domain on binding to SRE-RNA.

Ravindranathan S, Oberstrass FC, Allain FH.

J Mol Biol. 2010 Feb 26;396(3):732-46. doi: 10.1016/j.jmb.2009.12.004. Epub 2009 Dec 11.

PMID:
20004205
[PubMed - indexed for MEDLINE]
12.

The Mtr2-Mex67 NTF2-like domain complex. Structural insights into a dual role of Mtr2 for yeast nuclear export.

Senay C, Ferrari P, Rocher C, Rieger KJ, Winter J, Platel D, Bourne Y.

J Biol Chem. 2003 Nov 28;278(48):48395-403. Epub 2003 Sep 22.

PMID:
14504280
[PubMed - indexed for MEDLINE]
Free Article
13.

Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein.

Wang Y, Opperman L, Wickens M, Hall TM.

Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20186-91. doi: 10.1073/pnas.0812076106. Epub 2009 Nov 9.

PMID:
19901328
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Solution structure of the Vts1 SAM domain in the presence of RNA.

Edwards TA, Butterwick JA, Zeng L, Gupta YK, Wang X, Wharton RP, Palmer AG 3rd, Aggarwal AK.

J Mol Biol. 2006 Mar 10;356(5):1065-72. Epub 2005 Dec 20.

PMID:
16405996
[PubMed - indexed for MEDLINE]
15.

Two yeast PUF proteins negatively regulate a single mRNA.

Hook BA, Goldstrohm AC, Seay DJ, Wickens M.

J Biol Chem. 2007 May 25;282(21):15430-8. Epub 2007 Mar 27.

PMID:
17389596
[PubMed - indexed for MEDLINE]
Free Article
16.

Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III.

Wu H, Henras A, Chanfreau G, Feigon J.

Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8307-12. Epub 2004 May 18.

PMID:
15150409
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

RNA recognition by the Vts1p SAM domain.

Johnson PE, Donaldson LW.

Nat Struct Mol Biol. 2006 Feb;13(2):177-8. Epub 2006 Jan 22.

PMID:
16429155
[PubMed - indexed for MEDLINE]
18.

Structural modeling identified the tRNA-binding domain of Utp8p, an essential nucleolar component of the nuclear tRNA export machinery of Saccharomyces cerevisiae.

McGuire AT, Keates RA, Cook S, Mangroo D.

Biochem Cell Biol. 2009 Apr;87(2):431-43. doi: 10.1139/o08-145.

PMID:
19370060
[PubMed - indexed for MEDLINE]
19.

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast.

Gerber AP, Herschlag D, Brown PO.

PLoS Biol. 2004 Mar;2(3):E79. Epub 2004 Mar 16.

PMID:
15024427
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The NMR and X-ray structures of the Saccharomyces cerevisiae Vts1 SAM domain define a surface for the recognition of RNA hairpins.

Aviv T, Amborski AN, Zhao XS, Kwan JJ, Johnson PE, Sicheri F, Donaldson LW.

J Mol Biol. 2006 Feb 17;356(2):274-9. Epub 2005 Dec 7.

PMID:
16375924
[PubMed - indexed for MEDLINE]

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