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Items: 1 to 20 of 97

1.

Distinct genomic signatures of adaptation in pre- and postnatal environments during human evolution.

Uddin M, Goodman M, Erez O, Romero R, Liu G, Islam M, Opazo JC, Sherwood CC, Grossman LI, Wildman DE.

Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3215-20. doi: 10.1073/pnas.0712400105. Epub 2008 Feb 27.

2.

Colloquium paper: phylogenomic evidence of adaptive evolution in the ancestry of humans.

Goodman M, Sterner KN.

Proc Natl Acad Sci U S A. 2010 May 11;107 Suppl 2:8918-23. doi: 10.1073/pnas.0914626107. Epub 2010 May 5.

3.

Phylogenomic analyses reveal convergent patterns of adaptive evolution in elephant and human ancestries.

Goodman M, Sterner KN, Islam M, Uddin M, Sherwood CC, Hof PR, Hou ZC, Lipovich L, Jia H, Grossman LI, Wildman DE.

Proc Natl Acad Sci U S A. 2009 Dec 8;106(49):20824-9. doi: 10.1073/pnas.0911239106. Epub 2009 Nov 19.

4.

Adaptive history of single copy genes highly expressed in the term human placenta.

Hou Z, Romero R, Uddin M, Than NG, Wildman DE.

Genomics. 2009 Jan;93(1):33-41. doi: 10.1016/j.ygeno.2008.09.005. Epub 2008 Nov 5.

5.

Reconstructing phylogenies and phenotypes: a molecular view of human evolution.

Bradley BJ.

J Anat. 2008 Apr;212(4):337-53. doi: 10.1111/j.1469-7580.2007.00840.x. Review.

6.

The parallel evolution of dwarfism in Arctic charr is accompanied by adaptive divergence in mTOR-pathway gene expression.

Macqueen DJ, Kristjánsson BK, Paxton CG, Vieira VL, Johnston IA.

Mol Ecol. 2011 Aug;20(15):3167-84. doi: 10.1111/j.1365-294X.2011.05172.x. Epub 2011 Jun 29.

PMID:
21714822
7.

The repeatability of adaptive radiation during long-term experimental evolution of Escherichia coli in a multiple nutrient environment.

Saxer G, Doebeli M, Travisano M.

PLoS One. 2010 Dec 2;5(12):e14184. doi: 10.1371/journal.pone.0014184.

8.

Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers.

Perry GH, Foll M, Grenier JC, Patin E, Nédélec Y, Pacis A, Barakatt M, Gravel S, Zhou X, Nsobya SL, Excoffier L, Quintana-Murci L, Dominy NJ, Barreiro LB.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):E3596-603. doi: 10.1073/pnas.1402875111. Epub 2014 Aug 18.

9.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28.

10.

Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome.

Ni X, Zhang YE, Nègre N, Chen S, Long M, White KP.

PLoS Biol. 2012;10(11):e1001420. doi: 10.1371/journal.pbio.1001420. Epub 2012 Nov 6.

11.

Convergence, adaptation, and constraint.

Losos JB.

Evolution. 2011 Jul;65(7):1827-40. doi: 10.1111/j.1558-5646.2011.01289.x. Epub 2011 Apr 7. Review.

PMID:
21729041
12.

Evolutionary dynamics of bacteria in a human host environment.

Yang L, Jelsbak L, Marvig RL, Damkiær S, Workman CT, Rau MH, Hansen SK, Folkesson A, Johansen HK, Ciofu O, Høiby N, Sommer MO, Molin S.

Proc Natl Acad Sci U S A. 2011 May 3;108(18):7481-6. doi: 10.1073/pnas.1018249108. Epub 2011 Apr 25.

13.

Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence.

Rands CM, Darling A, Fujita M, Kong L, Webster MT, Clabaut C, Emes RD, Heger A, Meader S, Hawkins MB, Eisen MB, Teiling C, Affourtit J, Boese B, Grant PR, Grant BR, Eisen JA, Abzhanov A, Ponting CP.

BMC Genomics. 2013 Feb 12;14:95. doi: 10.1186/1471-2164-14-95.

14.

Parallel genetic evolution within and between bacteriophage species of varying degrees of divergence.

Bollback JP, Huelsenbeck JP.

Genetics. 2009 Jan;181(1):225-34. doi: 10.1534/genetics.107.085225. Epub 2008 Nov 10.

15.

Comparative genomics search for losses of long-established genes on the human lineage.

Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.

PLoS Comput Biol. 2007 Dec;3(12):e247.

16.

Experimental evolution of bet hedging.

Beaumont HJ, Gallie J, Kost C, Ferguson GC, Rainey PB.

Nature. 2009 Nov 5;462(7269):90-3. doi: 10.1038/nature08504.

PMID:
19890329
17.

Evolution of stochastic switching rates in asymmetric fitness landscapes.

Salathé M, Van Cleve J, Feldman MW.

Genetics. 2009 Aug;182(4):1159-64. doi: 10.1534/genetics.109.103333. Epub 2009 May 27.

18.

Guided evolution of in silico microbial populations in complex environments accelerates evolutionary rates through a step-wise adaptation.

Mozhayskiy V, Tagkopoulos I.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S10. doi: 10.1186/1471-2105-13-S10-S10.

20.

Adaptive evolution of loci covarying with the human African Pygmy phenotype.

Mendizabal I, Marigorta UM, Lao O, Comas D.

Hum Genet. 2012 Aug;131(8):1305-17. doi: 10.1007/s00439-012-1157-3. Epub 2012 Mar 11.

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