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Results: 1 to 20 of 168

1.

Extremely intron-rich genes in the alveolate ancestors inferred with a flexible maximum-likelihood approach.

Csurös M, Rogozin IB, Koonin EV.

Mol Biol Evol. 2008 May;25(5):903-11. doi: 10.1093/molbev/msn039. Epub 2008 Feb 21.

PMID:
18296415
[PubMed - indexed for MEDLINE]
Free Article
2.

Analysis of evolution of exon-intron structure of eukaryotic genes.

Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV.

Brief Bioinform. 2005 Jun;6(2):118-34. Review.

PMID:
15975222
[PubMed - indexed for MEDLINE]
Free Article
3.

Genomic reduction and evolution of novel genetic membranes and protein-targeting machinery in eukaryote-eukaryote chimaeras (meta-algae).

Cavalier-Smith T.

Philos Trans R Soc Lond B Biol Sci. 2003 Jan 29;358(1429):109-33; discussion 133-4.

PMID:
12594921
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates.

Hackett JD, Yoon HS, Li S, Reyes-Prieto A, Rümmele SE, Bhattacharya D.

Mol Biol Evol. 2007 Aug;24(8):1702-13. Epub 2007 May 7.

PMID:
17488740
[PubMed - indexed for MEDLINE]
Free Article
5.

On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes.

Harper JT, Waanders E, Keeling PJ.

Int J Syst Evol Microbiol. 2005 Jan;55(Pt 1):487-96.

PMID:
15653923
[PubMed - indexed for MEDLINE]
Free Article
6.

A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes.

Csuros M, Rogozin IB, Koonin EV.

PLoS Comput Biol. 2011 Sep;7(9):e1002150. doi: 10.1371/journal.pcbi.1002150. Epub 2011 Sep 15.

PMID:
21935348
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Origin and evolution of spliceosomal introns.

Rogozin IB, Carmel L, Csuros M, Koonin EV.

Biol Direct. 2012 Apr 16;7:11. doi: 10.1186/1745-6150-7-11. Review.

PMID:
22507701
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Patterns of intron gain and conservation in eukaryotic genes.

Carmel L, Rogozin IB, Wolf YI, Koonin EV.

BMC Evol Biol. 2007 Oct 12;7:192.

PMID:
17935625
[PubMed]
Free PMC Article
9.

Whence genes in pieces: reconstruction of the exon-intron gene structures of the last eukaryotic common ancestor and other ancestral eukaryotes.

Koonin EV, Csuros M, Rogozin IB.

Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):93-105. doi: 10.1002/wrna.1143. Epub 2012 Nov 8. Review.

PMID:
23139082
[PubMed - indexed for MEDLINE]
10.

Evolutionary dynamics of introns in plastid-derived genes in plants: saturation nearly reached but slow intron gain continues.

Basu MK, Rogozin IB, Deusch O, Dagan T, Martin W, Koonin EV.

Mol Biol Evol. 2008 Jan;25(1):111-9. Epub 2007 Oct 31.

PMID:
17974547
[PubMed - indexed for MEDLINE]
Free Article
11.

Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution.

Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV.

Curr Biol. 2003 Sep 2;13(17):1512-7.

PMID:
12956953
[PubMed - indexed for MEDLINE]
Free Article
12.

Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome.

Irimia M, Roy SW.

PLoS Genet. 2008 Aug 8;4(8):e1000148. doi: 10.1371/journal.pgen.1000148.

PMID:
18688272
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa.

Cavalier-Smith T.

Int J Syst Evol Microbiol. 2002 Mar;52(Pt 2):297-354. Review.

PMID:
11931142
[PubMed - indexed for MEDLINE]
Free Article
15.

EFL GTPase in cryptomonads and the distribution of EFL and EF-1alpha in chromalveolates.

Gile GH, Patron NJ, Keeling PJ.

Protist. 2006 Oct;157(4):435-44. Epub 2006 Aug 10.

PMID:
16904374
[PubMed - indexed for MEDLINE]
16.

Comparative genomic analysis of fungal genomes reveals intron-rich ancestors.

Stajich JE, Dietrich FS, Roy SW.

Genome Biol. 2007;8(10):R223.

PMID:
17949488
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Re-examining alveolate evolution using multiple protein molecular phylogenies.

Fast NM, Xue L, Bingham S, Keeling PJ.

J Eukaryot Microbiol. 2002 Jan-Feb;49(1):30-7.

PMID:
11908896
[PubMed - indexed for MEDLINE]
18.

A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain.

Roy SW, Penny D.

Mol Biol Evol. 2007 Jul;24(7):1447-57. Epub 2007 Mar 8.

PMID:
17350938
[PubMed - indexed for MEDLINE]
Free Article
19.

The evolution of spliceosomal introns in alveolates.

Nguyen HD, Yoshihama M, Kenmochi N.

Mol Biol Evol. 2007 May;24(5):1093-6. Epub 2007 Mar 1.

PMID:
17331959
[PubMed - indexed for MEDLINE]
Free Article
20.

Evolution of spliceosomal introns following endosymbiotic gene transfer.

Ahmadinejad N, Dagan T, Gruenheit N, Martin W, Gabaldón T.

BMC Evol Biol. 2010 Feb 23;10:57. doi: 10.1186/1471-2148-10-57.

PMID:
20178587
[PubMed - indexed for MEDLINE]
Free PMC Article

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