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Probiotic modulation of symbiotic gut microbial-host metabolic interactions in a humanized microbiome mouse model.

Martin FP, Wang Y, Sprenger N, Yap IK, Lundstedt T, Lek P, Rezzi S, Ramadan Z, van Bladeren P, Fay LB, Kochhar S, Lindon JC, Holmes E, Nicholson JK.

Mol Syst Biol. 2008;4:157. doi: 10.1038/msb4100190. Epub 2008 Jan 15.


A top-down systems biology view of microbiome-mammalian metabolic interactions in a mouse model.

Martin FP, Dumas ME, Wang Y, Legido-Quigley C, Yap IK, Tang H, Zirah S, Murphy GM, Cloarec O, Lindon JC, Sprenger N, Fay LB, Kochhar S, van Bladeren P, Holmes E, Nicholson JK.

Mol Syst Biol. 2007;3:112. Epub 2007 May 22.


Top-down systems biology integration of conditional prebiotic modulated transgenomic interactions in a humanized microbiome mouse model.

Martin FP, Wang Y, Sprenger N, Yap IK, Rezzi S, Ramadan Z, Peré-Trepat E, Rochat F, Cherbut C, van Bladeren P, Fay LB, Kochhar S, Lindon JC, Holmes E, Nicholson JK.

Mol Syst Biol. 2008;4:205. doi: 10.1038/msb.2008.40. Epub 2008 Jul 15.


Dietary modulation of gut functional ecology studied by fecal metabonomics.

Martin FP, Sprenger N, Montoliu I, Rezzi S, Kochhar S, Nicholson JK.

J Proteome Res. 2010 Oct 1;9(10):5284-95. doi: 10.1021/pr100554m.


Panorganismal gut microbiome-host metabolic crosstalk.

Martin FP, Sprenger N, Yap IK, Wang Y, Bibiloni R, Rochat F, Rezzi S, Cherbut C, Kochhar S, Lindon JC, Holmes E, Nicholson JK.

J Proteome Res. 2009 Apr;8(4):2090-105. doi: 10.1021/pr801068x.


Systemic multicompartmental effects of the gut microbiome on mouse metabolic phenotypes.

Claus SP, Tsang TM, Wang Y, Cloarec O, Skordi E, Martin FP, Rezzi S, Ross A, Kochhar S, Holmes E, Nicholson JK.

Mol Syst Biol. 2008;4:219. doi: 10.1038/msb.2008.56. Epub 2008 Oct 14.


Modulation of the murine microbiome with a concomitant anti-obesity effect by Lactobacillus rhamnosus GG and Lactobacillus sakei NR28.

Ji YS, Kim HN, Park HJ, Lee JE, Yeo SY, Yang JS, Park SY, Yoon HS, Cho GS, Franz CM, Bomba A, Shin HK, Holzapfel WH.

Benef Microbes. 2012 Mar 1;3(1):13-22. doi: 10.3920/BM2011.0046.


Feed supplementation of Lactobacillus plantarum PCA 236 modulates gut microbiota and milk fatty acid composition in dairy goats--a preliminary study.

Maragkoudakis PA, Mountzouris KC, Rosu C, Zoumpopoulou G, Papadimitriou K, Dalaka E, Hadjipetrou A, Theofanous G, Strozzi GP, Carlini N, Zervas G, Tsakalidou E.

Int J Food Microbiol. 2010 Jul 31;141 Suppl 1:S109-16. doi: 10.1016/j.ijfoodmicro.2010.03.007. Epub 2010 Mar 16.


Impact of a synbiotic food on the gut microbial ecology and metabolic profiles.

Vitali B, Ndagijimana M, Cruciani F, Carnevali P, Candela M, Guerzoni ME, Brigidi P.

BMC Microbiol. 2010 Jan 7;10:4. doi: 10.1186/1471-2180-10-4.


Systemic gut microbial modulation of bile acid metabolism in host tissue compartments.

Swann JR, Want EJ, Geier FM, Spagou K, Wilson ID, Sidaway JE, Nicholson JK, Holmes E.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4523-30. doi: 10.1073/pnas.1006734107. Epub 2010 Sep 13.


Age-related topographical metabolic signatures for the rat gastrointestinal contents.

Tian Y, Zhang L, Wang Y, Tang H.

J Proteome Res. 2012 Feb 3;11(2):1397-411. doi: 10.1021/pr2011507. Epub 2011 Dec 27.


Effects of probiotic Lactobacillus paracasei treatment on the host gut tissue metabolic profiles probed via magic-angle-spinning NMR spectroscopy.

Martin FP, Wang Y, Sprenger N, Holmes E, Lindon JC, Kochhar S, Nicholson JK.

J Proteome Res. 2007 Apr;6(4):1471-81. Epub 2007 Feb 23.


The microbiome and obesity: is obesity linked to our gut flora?

Tsai F, Coyle WJ.

Curr Gastroenterol Rep. 2009 Aug;11(4):307-13. Review.


Arsenic exposure perturbs the gut microbiome and its metabolic profile in mice: an integrated metagenomics and metabolomics analysis.

Lu K, Abo RP, Schlieper KA, Graffam ME, Levine S, Wishnok JS, Swenberg JA, Tannenbaum SR, Fox JG.

Environ Health Perspect. 2014 Mar;122(3):284-91. doi: 10.1289/ehp.1307429. Epub 2014 Jan 10.


Effects of probiotics and antibiotics on the intestinal homeostasis in a computer controlled model of the large intestine.

Rehman A, Heinsen FA, Koenen ME, Venema K, Knecht H, Hellmig S, Schreiber S, Ott SJ.

BMC Microbiol. 2012 Mar 27;12:47. doi: 10.1186/1471-2180-12-47.


Panorganismal metabolic response modeling of an experimental Echinostoma caproni infection in the mouse.

Saric J, Li JV, Wang Y, Keiser J, Veselkov K, Dirnhofer S, Yap IK, Nicholson JK, Holmes E, Utzinger J.

J Proteome Res. 2009 Aug;8(8):3899-911. doi: 10.1021/pr900185s.


Transgenomic metabolic interactions in a mouse disease model: interactions of Trichinella spiralis infection with dietary Lactobacillus paracasei supplementation.

Martin FP, Verdu EF, Wang Y, Dumas ME, Yap IK, Cloarec O, Bergonzelli GE, Corthesy-Theulaz I, Kochhar S, Holmes E, Lindon JC, Collins SM, Nicholson JK.

J Proteome Res. 2006 Sep;5(9):2185-93.


Metagenomic analyses of alcohol induced pathogenic alterations in the intestinal microbiome and the effect of Lactobacillus rhamnosus GG treatment.

Bull-Otterson L, Feng W, Kirpich I, Wang Y, Qin X, Liu Y, Gobejishvili L, Joshi-Barve S, Ayvaz T, Petrosino J, Kong M, Barker D, McClain C, Barve S.

PLoS One. 2013;8(1):e53028. doi: 10.1371/journal.pone.0053028. Epub 2013 Jan 9.


The potential for probiotic manipulation of the gastrointestinal microbiome.

Rauch M, Lynch SV.

Curr Opin Biotechnol. 2012 Apr;23(2):192-201. doi: 10.1016/j.copbio.2011.11.004. Epub 2011 Nov 30. Review.

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