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Similar articles for PubMed (Select 18192387)

1.

Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1.

Oberhardt MA, Puchałka J, Fryer KE, Martins dos Santos VA, Papin JA.

J Bacteriol. 2008 Apr;190(8):2790-803. doi: 10.1128/JB.01583-07. Epub 2008 Jan 11.

2.

Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.

Stover CK, Pham XQ, Erwin AL, Mizoguchi SD, Warrener P, Hickey MJ, Brinkman FS, Hufnagle WO, Kowalik DJ, Lagrou M, Garber RL, Goltry L, Tolentino E, Westbrock-Wadman S, Yuan Y, Brody LL, Coulter SN, Folger KR, Kas A, Larbig K, Lim R, Smith K, Spencer D, Wong GK, Wu Z, Paulsen IT, Reizer J, Saier MH, Hancock RE, Lory S, Olson MV.

Nature. 2000 Aug 31;406(6799):959-64.

PMID:
10984043
3.

Targeting multiple targets in Pseudomonas aeruginosa PAO1 using flux balance analysis of a reconstructed genome-scale metabolic network.

Perumal D, Samal A, Sakharkar KR, Sakharkar MK.

J Drug Target. 2011 Jan;19(1):1-13. doi: 10.3109/10611861003649753. Epub 2010 Mar 16.

PMID:
20233082
4.

Genome-scale analysis of Mannheimia succiniciproducens metabolism.

Kim TY, Kim HU, Park JM, Song H, Kim JS, Lee SY.

Biotechnol Bioeng. 2007 Jul 1;97(4):657-71.

PMID:
17405177
5.

Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network.

Lee J, Yun H, Feist AM, Palsson BØ, Lee SY.

Appl Microbiol Biotechnol. 2008 Oct;80(5):849-62. doi: 10.1007/s00253-008-1654-4. Epub 2008 Aug 29.

PMID:
18758767
6.

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology.

Puchałka J, Oberhardt MA, Godinho M, Bielecka A, Regenhardt D, Timmis KN, Papin JA, Martins dos Santos VA.

PLoS Comput Biol. 2008 Oct;4(10):e1000210. doi: 10.1371/journal.pcbi.1000210. Epub 2008 Oct 31.

7.

Exploiting the pathway structure of metabolism to reveal high-order epistasis.

Imielinski M, Belta C.

BMC Syst Biol. 2008 Apr 30;2:40. doi: 10.1186/1752-0509-2-40.

8.

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M, Holmes M, Brinkac L, Beanan M, DeBoy RT, Daugherty S, Kolonay J, Madupu R, Nelson W, White O, Peterson J, Khouri H, Hance I, Chris Lee P, Holtzapple E, Scanlan D, Tran K, Moazzez A, Utterback T, Rizzo M, Lee K, Kosack D, Moestl D, Wedler H, Lauber J, Stjepandic D, Hoheisel J, Straetz M, Heim S, Kiewitz C, Eisen JA, Timmis KN, Düsterhöft A, Tümmler B, Fraser CM.

Environ Microbiol. 2002 Dec;4(12):799-808. Erratum in: Environ Microbiol. 2003 Jul;5(7):630.

PMID:
12534463
9.

Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data.

Oh YK, Palsson BO, Park SM, Schilling CH, Mahadevan R.

J Biol Chem. 2007 Sep 28;282(39):28791-9. Epub 2007 Jun 15.

10.

Genome-scale constraint-based modeling of Geobacter metallireducens.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.

BMC Syst Biol. 2009 Jan 28;3:15. doi: 10.1186/1752-0509-3-15.

11.

Differential genome analyses of metabolic enzymes in Pseudomonas aeruginosa for drug target identification.

Perumal D, Lim CS, Sakharkar KR, Sakharkar MK.

In Silico Biol. 2007;7(4-5):453-65.

PMID:
18391237
12.

Identification and characterization of novel pyoverdine synthesis genes in Pseudomonas aeruginosa.

Lamont IL, Martin LW.

Microbiology. 2003 Apr;149(Pt 4):833-42.

PMID:
12686626
13.

Comparative analysis of metabolic networks provides insight into the evolution of plant pathogenic and nonpathogenic lifestyles in Pseudomonas.

Mithani A, Hein J, Preston GM.

Mol Biol Evol. 2011 Jan;28(1):483-99. doi: 10.1093/molbev/msq213. Epub 2010 Aug 13.

14.
15.

Genome-scale modeling and in silico analysis of mouse cell metabolic network.

Selvarasu S, Karimi IA, Ghim GH, Lee DY.

Mol Biosyst. 2010 Jan;6(1):152-61. doi: 10.1039/b912865d. Epub 2009 Sep 2.

PMID:
20024077
16.

Design and application of genome-scale reconstructed metabolic models.

Rocha I, Förster J, Nielsen J.

Methods Mol Biol. 2008;416:409-31. doi: 10.1007/978-1-59745-321-9_29.

PMID:
18392985
17.

A minimal tiling path cosmid library for functional analysis of the Pseudomonas aeruginosa PAO1 genome.

Huang B, Whitchurch CB, Croft L, Beatson SA, Mattick JS.

Microb Comp Genomics. 2000;5(4):189-203.

PMID:
11471833
18.

Pseudomonas aeruginosa O-antigen chain length is determined before ligation to lipid A core.

Daniels C, Griffiths C, Cowles B, Lam JS.

Environ Microbiol. 2002 Dec;4(12):883-97.

PMID:
12534470
19.

SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas.

Choi C, Münch R, Leupold S, Klein J, Siegel I, Thielen B, Benkert B, Kucklick M, Schobert M, Barthelmes J, Ebeling C, Haddad I, Scheer M, Grote A, Hiller K, Bunk B, Schreiber K, Retter I, Schomburg D, Jahn D.

Nucleic Acids Res. 2007 Jan;35(Database issue):D533-7.

20.

Global reconstruction of the human metabolic network based on genomic and bibliomic data.

Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BØ.

Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1777-82. Epub 2007 Jan 31.

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