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Items: 1 to 20 of 72


Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation.

Michael S, Travé G, Ramu C, Chica C, Gibson TJ.

Bioinformatics. 2008 Feb 15;24(4):453-7. doi: 10.1093/bioinformatics/btm624. Epub 2008 Jan 9.


GPS-ARM: computational analysis of the APC/C recognition motif by predicting D-boxes and KEN-boxes.

Liu Z, Yuan F, Ren J, Cao J, Zhou Y, Yang Q, Xue Y.

PLoS One. 2012;7(3):e34370. doi: 10.1371/journal.pone.0034370. Epub 2012 Mar 29.


A structure filter for the Eukaryotic Linear Motif Resource.

Via A, Gould CM, Gemünd C, Gibson TJ, Helmer-Citterich M.

BMC Bioinformatics. 2009 Oct 24;10:351. doi: 10.1186/1471-2105-10-351.


ELM: the status of the 2010 eukaryotic linear motif resource.

Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80. doi: 10.1093/nar/gkp1016. Epub 2009 Nov 17.


The spindle checkpoint functions of Mad3 and Mad2 depend on a Mad3 KEN box-mediated interaction with Cdc20-anaphase-promoting complex (APC/C).

Sczaniecka M, Feoktistova A, May KM, Chen JS, Blyth J, Gould KL, Hardwick KG.

J Biol Chem. 2008 Aug 22;283(34):23039-47. doi: 10.1074/jbc.M803594200. Epub 2008 Jun 13.


KEPE--a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors.

Diella F, Chabanis S, Luck K, Chica C, Ramu C, Nerlov C, Gibson TJ.

Bioinformatics. 2009 Jan 1;25(1):1-5. doi: 10.1093/bioinformatics/btn594. Epub 2008 Nov 24.


Human Kid is degraded by the APC/C(Cdh1) but not by the APC/C(Cdc20).

Feine O, Zur A, Mahbubani H, Brandeis M.

Cell Cycle. 2007 Oct 15;6(20):2516-23. Epub 2007 Jul 24.


ELM--the database of eukaryotic linear motifs.

Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ.

Nucleic Acids Res. 2012 Jan;40(Database issue):D242-51. doi: 10.1093/nar/gkr1064. Epub 2011 Nov 21.


The KEN box: an APC recognition signal distinct from the D box targeted by Cdh1.

Pfleger CM, Kirschner MW.

Genes Dev. 2000 Mar 15;14(6):655-65.


Uncoupling of the spindle-checkpoint and chromosome-congression functions of BubR1.

Elowe S, Dulla K, Uldschmid A, Li X, Dou Z, Nigg EA.

J Cell Sci. 2010 Jan 1;123(Pt 1):84-94. doi: 10.1242/jcs.056507.


ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.

Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C, Gudavalli R, Letunic I, Bork P, Rychlewski L, Küster B, Helmer-Citterich M, Hunter WN, Aasland R, Gibson TJ.

Nucleic Acids Res. 2003 Jul 1;31(13):3625-30.


Exploration of novel motifs derived from mouse cDNA sequences.

Kawaji H, Schönbach C, Matsuo Y, Kawai J, Okazaki Y, Hayashizaki Y, Matsuda H.

Genome Res. 2002 Mar;12(3):367-78.


Structure of the mitotic checkpoint complex.

Chao WC, Kulkarni K, Zhang Z, Kong EH, Barford D.

Nature. 2012 Mar 21;484(7393):208-13. doi: 10.1038/nature10896.


Regulatory motif finding by logic regression.

Keles S, van der Laan MJ, Vulpe C.

Bioinformatics. 2004 Nov 1;20(16):2799-811. Epub 2004 May 27.


Mutational analysis of conserved sequence motifs in the budding yeast Cdc6 protein.

Schepers A, Diffley JF.

J Mol Biol. 2001 May 11;308(4):597-608.

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