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Results: 1 to 20 of 109

1.

Genomic plasticity in prokaryotes: the case of the square haloarchaeon.

Cuadros-Orellana S, Martin-Cuadrado AB, Legault B, D'Auria G, Zhaxybayeva O, Papke RT, Rodriguez-Valera F.

ISME J. 2007 Jul;1(3):235-45. Epub 2007 May 31.

PMID:
18043634
[PubMed - indexed for MEDLINE]
2.

Environmental genomics of "Haloquadratum walsbyi" in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species.

Legault BA, Lopez-Lopez A, Alba-Casado JC, Doolittle WF, Bolhuis H, Rodriguez-Valera F, Papke RT.

BMC Genomics. 2006 Jul 4;7:171.

PMID:
16820057
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions.

Martin-Cuadrado AB, Rodriguez-Valera F, Moreira D, Alba JC, Ivars-Martínez E, Henn MR, Talla E, López-García P.

ISME J. 2008 Aug;2(8):865-86. doi: 10.1038/ismej.2008.40. Epub 2008 May 8.

PMID:
18463691
[PubMed - indexed for MEDLINE]
4.

Genomic survey of sequence features for ultraviolet tolerance in Haloarchaea (family Halobacteriaceae).

Zhou P, Wen J, Oren A, Chen M, Wu M.

Genomics. 2007 Jul;90(1):103-9. Epub 2007 May 11.

PMID:
17498923
[PubMed - indexed for MEDLINE]
Free Article
5.

Genomic island identification in Vibrio vulnificus reveals significant genome plasticity in this human pathogen.

Quirke AM, Reen FJ, Claesson MJ, Boyd EF.

Bioinformatics. 2006 Apr 15;22(8):905-10. Epub 2006 Jan 27.

PMID:
16443635
[PubMed - indexed for MEDLINE]
Free Article
6.

Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber.

Pasić L, Rodriguez-Mueller B, Martin-Cuadrado AB, Mira A, Rohwer F, Rodriguez-Valera F.

BMC Genomics. 2009 Dec 1;10:570. doi: 10.1186/1471-2164-10-570.

PMID:
19951421
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Low-pass sequencing for microbial comparative genomics.

Goo YA, Roach J, Glusman G, Baliga NS, Deutsch K, Pan M, Kennedy S, DasSarma S, Ng WV, Hood L.

BMC Genomics. 2004 Jan 12;5(1):3.

PMID:
14718067
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Metagenomic approach to the study of halophages: the environmental halophage 1.

Santos F, Meyerdierks A, Peña A, Rosselló-Mora R, Amann R, Antón J.

Environ Microbiol. 2007 Jul;9(7):1711-23.

PMID:
17564605
[PubMed - indexed for MEDLINE]
9.

Reconstructing viral genomes from the environment using fosmid clones: the case of haloviruses.

Garcia-Heredia I, Martin-Cuadrado AB, Mojica FJ, Santos F, Mira A, Antón J, Rodriguez-Valera F.

PLoS One. 2012;7(3):e33802. doi: 10.1371/journal.pone.0033802. Epub 2012 Mar 30.

PMID:
22479446
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Draft genome sequence of the extremely halophilic archaeon Halogranum salarium B-1T.

Kim KK, Lee KC, Lee JS.

J Bacteriol. 2012 Dec;194(23):6659. doi: 10.1128/JB.01815-12.

PMID:
23144405
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

SIGI: score-based identification of genomic islands.

Merkl R.

BMC Bioinformatics. 2004 Mar 3;5:22.

PMID:
15113412
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genomic island excisions in Bordetella petrii.

Lechner M, Schmitt K, Bauer S, Hot D, Hubans C, Levillain E, Locht C, Lemoine Y, Gross R.

BMC Microbiol. 2009 Jul 18;9:141. doi: 10.1186/1471-2180-9-141.

PMID:
19615092
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains.

Peña A, Teeling H, Huerta-Cepas J, Santos F, Yarza P, Brito-Echeverría J, Lucio M, Schmitt-Kopplin P, Meseguer I, Schenowitz C, Dossat C, Barbe V, Dopazo J, Rosselló-Mora R, Schüler M, Glöckner FO, Amann R, Gabaldón T, Antón J.

ISME J. 2010 Jul;4(7):882-95. doi: 10.1038/ismej.2010.6. Epub 2010 Feb 18.

PMID:
20164864
[PubMed - indexed for MEDLINE]
14.

Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity.

Walker CB, Stolyar S, Chivian D, Pinel N, Gabster JA, Dehal PS, He Z, Yang ZK, Yen HC, Zhou J, Wall JD, Hazen TC, Arkin AP, Stahl DA.

Environ Microbiol. 2009 Sep;11(9):2244-52. doi: 10.1111/j.1462-2920.2009.01946.x.

PMID:
19737303
[PubMed - indexed for MEDLINE]
15.

Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes.

Bohlin J, Skjerve E, Ussery DW.

BMC Genomics. 2008 Feb 28;9:104. doi: 10.1186/1471-2164-9-104.

PMID:
18307761
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genomic islands and the ecology and evolution of Prochlorococcus.

Coleman ML, Sullivan MB, Martiny AC, Steglich C, Barry K, Delong EF, Chisholm SW.

Science. 2006 Mar 24;311(5768):1768-70.

PMID:
16556843
[PubMed - indexed for MEDLINE]
Free Article
17.

Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes.

Makarova KS, Wolf YI, Koonin EV.

Biol Direct. 2009 Jun 3;4:19. doi: 10.1186/1745-6150-4-19.

PMID:
19493340
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation.

Allen MA, Lauro FM, Williams TJ, Burg D, Siddiqui KS, De Francisci D, Chong KW, Pilak O, Chew HH, De Maere MZ, Ting L, Katrib M, Ng C, Sowers KR, Galperin MY, Anderson IJ, Ivanova N, Dalin E, Martinez M, Lapidus A, Hauser L, Land M, Thomas T, Cavicchioli R.

ISME J. 2009 Sep;3(9):1012-35. doi: 10.1038/ismej.2009.45. Epub 2009 Apr 30.

PMID:
19404327
[PubMed - indexed for MEDLINE]
19.

High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes.

Hurst LD, Merchant AR.

Proc Biol Sci. 2001 Mar 7;268(1466):493-7.

PMID:
11296861
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer.

Yagi JM, Sims D, Brettin T, Bruce D, Madsen EL.

Environ Microbiol. 2009 Sep;11(9):2253-70. doi: 10.1111/j.1462-2920.2009.01947.x. Epub 2009 May 18.

PMID:
19453698
[PubMed - indexed for MEDLINE]

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