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Results: 1 to 20 of 135

1.

Selection for efficient translation initiation biases codon usage at second amino acid position in secretory proteins.

Zalucki YM, Power PM, Jennings MP.

Nucleic Acids Res. 2007;35(17):5748-54. Epub 2007 Aug 23.

PMID:
17717002
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Biased codon usage in signal peptides: a role in protein export.

Zalucki YM, Beacham IR, Jennings MP.

Trends Microbiol. 2009 Apr;17(4):146-50. doi: 10.1016/j.tim.2009.01.005. Epub 2009 Mar 21.

PMID:
19307122
[PubMed - indexed for MEDLINE]
3.

The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens.

Gu W, Zhou T, Ma J, Sun X, Lu Z.

Biosystems. 2004 Feb;73(2):89-97.

PMID:
15013221
[PubMed - indexed for MEDLINE]
4.

Experimental confirmation of a key role for non-optimal codons in protein export.

Zalucki YM, Jennings MP.

Biochem Biophys Res Commun. 2007 Mar 30;355(1):143-8. Epub 2007 Jan 31.

PMID:
17291454
[PubMed - indexed for MEDLINE]
5.

Positively charged amino acids placed next to a signal sequence block protein translocation more efficiently in Escherichia coli than in mammalian microsomes.

Johansson M, Nilsson I, von Heijne G.

Mol Gen Genet. 1993 May;239(1-2):251-6.

PMID:
8510652
[PubMed - indexed for MEDLINE]
6.
7.

The rapid evolution of signal peptides is mainly caused by relaxed selection on non-synonymous and synonymous sites.

Li YD, Xie ZY, Du YL, Zhou Z, Mao XM, Lv LX, Li YQ.

Gene. 2009 May 1;436(1-2):8-11. doi: 10.1016/j.gene.2009.01.015. Epub 2009 Feb 7.

PMID:
19393172
[PubMed - indexed for MEDLINE]
8.

Recognition of two initiation codons for the synthesis of phage fd gene 2 protein.

Meyer TF, Beyreuther K, Geider K.

Mol Gen Genet. 1980;180(3):489-94.

PMID:
7007816
[PubMed - indexed for MEDLINE]
9.

Extent of N-terminal methionine excision from Escherichia coli proteins is governed by the side-chain length of the penultimate amino acid.

Hirel PH, Schmitter MJ, Dessen P, Fayat G, Blanquet S.

Proc Natl Acad Sci U S A. 1989 Nov;86(21):8247-51.

PMID:
2682640
[PubMed - indexed for MEDLINE]
Free PMC Article
10.
11.

Whole genome analysis of non-optimal codon usage in secretory signal sequences of Streptomyces coelicolor.

Li YD, Li YQ, Chen JS, Dong HJ, Guan WJ, Zhou H.

Biosystems. 2006 Sep;85(3):225-30. Epub 2006 Mar 6.

PMID:
16644095
[PubMed - indexed for MEDLINE]
12.

Positively charged lysine at the N-terminus of the signal peptide of the Escherichia coli alkaline phosphatase provides the secretion efficiency and is involved in the interaction with anionic phospholipids.

Nesmeyanova MA, Karamyshev AL, Karamysheva ZN, Kalinin AE, Ksenzenko VN, Kajava AV.

FEBS Lett. 1997 Feb 17;403(2):203-7.

PMID:
9042967
[PubMed - indexed for MEDLINE]
Free Article
13.

Effect of membrane phospholipid composition and charge of the signal peptide of Escherichia coli alkaline phosphatase on efficiency of its secretion.

Golovastov VV, Nesmeyanova MA.

Biochemistry (Mosc). 2003 Oct;68(10):1089-96.

PMID:
14616079
[PubMed - indexed for MEDLINE]
14.

Translation initiation AUG context varies with codon usage bias and gene length in Drosophila melanogaster.

Miyasaka H.

J Mol Evol. 2002 Jul;55(1):52-64.

PMID:
12165842
[PubMed - indexed for MEDLINE]
15.

Domain-specific bias in arginine/lysine usage by protein toxins.

London E, Luongo CL.

Biochem Biophys Res Commun. 1989 Apr 14;160(1):333-9.

PMID:
2496688
[PubMed - indexed for MEDLINE]
16.

Optimizing scaleup yield for protein production: Computationally Optimized DNA Assembly (CODA) and Translation Engineering.

Hatfield GW, Roth DA.

Biotechnol Annu Rev. 2007;13:27-42. Review.

PMID:
17875472
[PubMed - indexed for MEDLINE]
17.

Position-specific Asp-Lys pairing can affect signal sequence function and membrane protein topology.

Andersson H, von Heijne G.

J Biol Chem. 1993 Oct 5;268(28):21389-93.

PMID:
8407979
[PubMed - indexed for MEDLINE]
Free Article
18.

Highly expressed proteins have an increased frequency of alanine in the second amino acid position.

Tats A, Remm M, Tenson T.

BMC Genomics. 2006 Feb 16;7:28.

PMID:
16483368
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Gradients in nucleotide and codon usage along Escherichia coli genes.

Hooper SD, Berg OG.

Nucleic Acids Res. 2000 Sep 15;28(18):3517-23.

PMID:
10982871
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Factors influencing the synonymous codon and amino acid usage bias in AT-rich Pseudomonas aeruginosa phage PhiKZ.

Sau K, Sau S, Mandal SC, Ghosh TC.

Acta Biochim Biophys Sin (Shanghai). 2005 Sep;37(9):625-33.

PMID:
16143818
[PubMed - indexed for MEDLINE]
Free Article
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