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Items: 1 to 20 of 109

1.

Mapping the genome landscape using tiling array technology.

Yazaki J, Gregory BD, Ecker JR.

Curr Opin Plant Biol. 2007 Oct;10(5):534-42. Epub 2007 Aug 20. Review.

2.

Utilizing tiling microarrays for whole-genome analysis in plants.

Gregory BD, Yazaki J, Ecker JR.

Plant J. 2008 Feb;53(4):636-44. doi: 10.1111/j.1365-313X.2007.03320.x. Review.

3.

Applications of DNA tiling arrays for whole-genome analysis.

Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR.

Genomics. 2005 Jan;85(1):1-15. Review. Erratum in: Genomics. 2005 May;85(5):655. Chan, Simon [added]; Sundaresan, Ambika [added]; Chen, Huaming [added]; Jacobsen, Steven E [added].

PMID:
15607417
4.

Detection of epigenetic alterations using tiling arrays.

Cheung HH, Rennert OM, Lee TL.

Methods Mol Biol. 2013;1067:79-86. doi: 10.1007/978-1-62703-607-8_6.

PMID:
23975787
5.

Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays.

Zhang X, Shiu SH, Cal A, Borevitz JO.

PLoS Genet. 2008 Mar 21;4(3):e1000032. doi: 10.1371/journal.pgen.1000032. Erratum in: PLoS Genet. 2008 Jun;4(6). doi: 10.1371/annotation/e21d3565-fec6-44d9-8fab-83da49c7c0b8. Shiu, Shinhan [corrected to Shiu, Shin-Han].

6.

Whole-genome microarrays: applications and technical issues.

Gregory BD, Belostotsky DA.

Methods Mol Biol. 2009;553:39-56. doi: 10.1007/978-1-60327-563-7_3. Review.

PMID:
19588100
7.

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery.

Bertone P, Gerstein M, Snyder M.

Chromosome Res. 2005;13(3):259-74. Review.

PMID:
15868420
8.

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.

Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR.

Cell. 2006 Sep 22;126(6):1189-201. Epub 2006 Aug 31.

9.

Epigenetic mapping and functional analysis in a breast cancer metastasis model using whole-genome promoter tiling microarrays.

Rodenhiser DI, Andrews J, Kennette W, Sadikovic B, Mendlowitz A, Tuck AB, Chambers AF.

Breast Cancer Res. 2008;10(4):R62. doi: 10.1186/bcr2121. Epub 2008 Jul 18.

10.

Transcript profiling in Arabidopsis with genome tiling microarrays.

Coman D, Gruissem W, Hennig L.

Methods Mol Biol. 2013;1067:35-49. doi: 10.1007/978-1-62703-607-8_3.

PMID:
23975784
11.

Design of tiling arrays and their application to bacterial transcriptome analysis.

Akama T, Nakamura K, Tanoue A, Suzuki K.

Methods Mol Biol. 2013;1067:23-34. doi: 10.1007/978-1-62703-607-8_2.

PMID:
23975783
12.

The epigenetic landscape of plants.

Zhang X.

Science. 2008 Apr 25;320(5875):489-92. doi: 10.1126/science.1153996.

PMID:
18436779
13.

Combining chromatin immunoprecipitation and oligonucleotide tiling arrays (ChIP-Chip) for functional genomic studies.

Eeckhoute J, Lupien M, Brown M.

Methods Mol Biol. 2009;556:155-64. doi: 10.1007/978-1-60327-192-9_11.

PMID:
19488877
14.

MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays.

Seifert M, Cortijo S, Colomé-Tatché M, Johannes F, Roudier F, Colot V.

Bioinformatics. 2012 Nov 15;28(22):2930-9. doi: 10.1093/bioinformatics/bts562. Epub 2012 Sep 17.

15.

Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays.

Eichner J, Zeller G, Laubinger S, Rätsch G.

BMC Bioinformatics. 2011 Feb 16;12:55. doi: 10.1186/1471-2105-12-55.

16.

Genome-wide transcription analyses in rice using tiling microarrays.

Li L, Wang X, Stolc V, Li X, Zhang D, Su N, Tongprasit W, Li S, Cheng Z, Wang J, Deng XW.

Nat Genet. 2006 Jan;38(1):124-9. Epub 2005 Dec 20.

PMID:
16369532
17.

Global analysis of gene expression using GeneChip microarrays.

Zhu T.

Curr Opin Plant Biol. 2003 Oct;6(5):418-25. Review.

PMID:
12972041
18.

Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes.

Naouar N, Vandepoele K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Rätsch G, Inzé D, Kuiper M, De Veylder L, Vuylsteke M.

Plant J. 2009 Jan;57(1):184-94. doi: 10.1111/j.1365-313X.2008.03662.x. Epub 2008 Sep 19.

19.

Genome-wide transcriptome analysis in yeast using high-density tiling arrays.

David L, Clauder-Münster S, Steinmetz LM.

Methods Mol Biol. 2011;759:107-23. doi: 10.1007/978-1-61779-173-4_7.

PMID:
21863484
20.

Transcriptional analysis of highly syntenic regions between Medicago truncatula and Glycine max using tiling microarrays.

Li L, He H, Zhang J, Wang X, Bai S, Stolc V, Tongprasit W, Young ND, Yu O, Deng XW.

Genome Biol. 2008;9(3):R57. doi: 10.1186/gb-2008-9-3-r57. Epub 2008 Mar 19.

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