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Items: 1 to 20 of 131

1.

MicroRNA targeting specificity in mammals: determinants beyond seed pairing.

Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP.

Mol Cell. 2007 Jul 6;27(1):91-105.

2.

Most mammalian mRNAs are conserved targets of microRNAs.

Friedman RC, Farh KK, Burge CB, Bartel DP.

Genome Res. 2009 Jan;19(1):92-105. doi: 10.1101/gr.082701.108. Epub 2008 Oct 27.

3.

Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila.

Gu J, Fu H, Zhang X, Li Y.

BMC Bioinformatics. 2007 Nov 8;8:432.

4.
5.

Determinants of targeting by endogenous and exogenous microRNAs and siRNAs.

Nielsen CB, Shomron N, Sandberg R, Hornstein E, Kitzman J, Burge CB.

RNA. 2007 Nov;13(11):1894-910. Epub 2007 Sep 13.

6.
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8.

Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH.

Ragan C, Cloonan N, Grimmond SM, Zuker M, Ragan MA.

PLoS One. 2009 May 29;4(5):e5745. doi: 10.1371/journal.pone.0005745. Erratum in: PLoS One. 2009;4(7). doi: 10.1371/annotation/e0842765-3cae-4737-8b5b-96aeb12d7fb5.

9.

Analysis of the accessibility of CLIP bound sites reveals that nucleation of the miRNA:mRNA pairing occurs preferentially at the 3'-end of the seed match.

Marín RM, Voellmy F, von Erlach T, Vaníček J.

RNA. 2012 Oct;18(10):1760-70. doi: 10.1261/rna.033282.112. Epub 2012 Aug 22.

10.

RNA-binding protein Dnd1 inhibits microRNA access to target mRNA.

Kedde M, Strasser MJ, Boldajipour B, Oude Vrielink JA, Slanchev K, le Sage C, Nagel R, Voorhoeve PM, van Duijse J, Ørom UA, Lund AH, Perrakis A, Raz E, Agami R.

Cell. 2007 Dec 28;131(7):1273-86.

11.

Mammalian microRNAs predominantly act to decrease target mRNA levels.

Guo H, Ingolia NT, Weissman JS, Bartel DP.

Nature. 2010 Aug 12;466(7308):835-40. doi: 10.1038/nature09267.

12.

Predicting the fate of microRNA target genes based on sequence features.

Pei Y, Wang X, Zhang X.

J Theor Biol. 2009 Nov 7;261(1):17-22. doi: 10.1016/j.jtbi.2009.07.022. Epub 2009 Jul 28.

PMID:
19643113
13.

Complementarity to an miRNA seed region is sufficient to induce moderate repression of a target transcript in the unicellular green alga Chlamydomonas reinhardtii.

Yamasaki T, Voshall A, Kim EJ, Moriyama E, Cerutti H, Ohama T.

Plant J. 2013 Dec;76(6):1045-56. doi: 10.1111/tpj.12354.

14.

Computational analysis of microRNA targets in Caenorhabditis elegans.

Watanabe Y, Yachie N, Numata K, Saito R, Kanai A, Tomita M.

Gene. 2006 Jan 3;365:2-10. Epub 2005 Dec 13.

PMID:
16356665
15.

Expanding the microRNA targeting code: functional sites with centered pairing.

Shin C, Nam JW, Farh KK, Chiang HR, Shkumatava A, Bartel DP.

Mol Cell. 2010 Jun 25;38(6):789-802. doi: 10.1016/j.molcel.2010.06.005.

16.

Sequence context outside the target region influences the effectiveness of miR-223 target sites in the RhoB 3'UTR.

Sun G, Li H, Rossi JJ.

Nucleic Acids Res. 2010 Jan;38(1):239-52. doi: 10.1093/nar/gkp870. Epub 2009 Oct 22.

17.

Large-scale screens of miRNA-mRNA interactions unveiled that the 3'UTR of a gene is targeted by multiple miRNAs.

Zhou P, Xu W, Peng X, Luo Z, Xing Q, Chen X, Hou C, Liang W, Zhou J, Wu X, Songyang Z, Jiang S.

PLoS One. 2013 Jul 9;8(7):e68204. doi: 10.1371/journal.pone.0068204. Print 2013.

18.

New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites.

Lee I, Ajay SS, Yook JI, Kim HS, Hong SH, Kim NH, Dhanasekaran SM, Chinnaiyan AM, Athey BD.

Genome Res. 2009 Jul;19(7):1175-83. doi: 10.1101/gr.089367.108. Epub 2009 Mar 31.

19.

Prediction of mammalian microRNA targets.

Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB.

Cell. 2003 Dec 26;115(7):787-98.

20.

Evolution of Hox post-transcriptional regulation by alternative polyadenylation and microRNA modulation within 12 Drosophila genomes.

Patraquim P, Warnefors M, Alonso CR.

Mol Biol Evol. 2011 Sep;28(9):2453-60. doi: 10.1093/molbev/msr073. Epub 2011 Mar 24.

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